Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 81–90 of 178 papers

Title	Date	Tasks	Status	Score
EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware Pseudocoloring	Apr 6, 2022	Cell SegmentationCell Tracking	CodeCode Available	5
Semi-Automatic Generation of Tight Binary Masks and Non-Convex Isosurfaces for Quantitative Analysis of 3D Biological Samples	Jan 30, 2020	Cell SegmentationSegmentation	CodeCode Available	5
EmbedTrack -- Simultaneous Cell Segmentation and Tracking Through Learning Offsets and Clustering Bandwidths	Apr 22, 2022	Cell SegmentationCell Tracking	CodeCode Available	5
Single cell resolution 3D imaging and segmentation within intact live tissues	Jan 31, 2025	Cell SegmentationSegmentation	CodeCode Available	5
Cell Segmentation and Tracking using CNN-Based Distance Predictions and a Graph-Based Matching Strategy	Apr 3, 2020	Cell SegmentationCell Tracking	CodeCode Available	5
Cell Segmentation by Combining Marker-Controlled Watershed and Deep Learning	Apr 3, 2020	Cell DetectionCell Segmentation	CodeCode Available	5
Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation	Aug 17, 2023	Cell SegmentationDiagnostic	CodeCode Available	5
Superadditivity and Convex Optimization for Globally Optimal Cell Segmentation using Deformable Shape Models	Jun 23, 2022	Cell SegmentationComputational Efficiency	CodeCode Available	5
Annotated Biomedical Video Generation using Denoising Diffusion Probabilistic Models and Flow Fields	Mar 26, 2024	Cell SegmentationDenoising	CodeCode Available	5
To pretrain or not to pretrain? A case study of domain-specific pretraining for semantic segmentation in histopathology	Jul 6, 2023	Cell SegmentationSegmentation	CodeCode Available	5

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified