Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 81–90 of 178 papers

Title	Date	Tasks	Status	Hype
Deep Learning in Single-Cell Analysis	Oct 22, 2022	Cell SegmentationDeep Learning	CodeCode Available	3
Scale Equivariant U-Net	Oct 10, 2022	Cell SegmentationSegmentation	—Unverified	0
Analysis of the performance of U-Net neural networks for the segmentation of living cells	Oct 4, 2022	Cell SegmentationCell Tracking	CodeCode Available	0
Automated Characterization of Catalytically Active Inclusion Body Production in Biotechnological Screening Systems	Sep 30, 2022	Cell SegmentationSegmentation	—Unverified	0
Adversarial Stain Transfer to Study the Effect of Color Variation on Cell Instance Segmentation	Sep 1, 2022	Cell SegmentationColor Normalization	—Unverified	0
Edge-Based Self-Supervision for Semi-Supervised Few-Shot Microscopy Image Cell Segmentation	Aug 3, 2022	Cell SegmentationSegmentation	—Unverified	0
Point2Mask: A Weakly Supervised Approach for Cell Segmentation Using Point Annotation	Jul 25, 2022	Cell SegmentationInstance Segmentation	—Unverified	0
Superadditivity and Convex Optimization for Globally Optimal Cell Segmentation using Deformable Shape Models	Jun 23, 2022	Cell SegmentationComputational Efficiency	CodeCode Available	0
ICOS Protein Expression Segmentation: Can Transformer Networks Give Better Results?	Jun 23, 2022	Cell Segmentation	CodeCode Available	1
A hybrid multi-object segmentation framework with model-based B-splines for microbial single cell analysis	May 3, 2022	Cell SegmentationSegmentation	—Unverified	0

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified