Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 81–90 of 178 papers

Title	Date	Tasks	Status
Morphological Profiling for Drug Discovery in the Era of Deep Learning	Dec 13, 2023	Cell SegmentationDeep Learning	—Unverified
CellMixer: Annotation-free Semantic Cell Segmentation of Heterogeneous Cell Populations	Dec 1, 2023	Cell SegmentationInstance Segmentation	—Unverified
Guided Prompting in SAM for Weakly Supervised Cell Segmentation in Histopathological Images	Nov 29, 2023	Cell SegmentationImage Segmentation	CodeCode Available
Denoising Diffusion Probabilistic Models for Image Inpainting of Cell Distributions in the Human Brain	Nov 28, 2023	Cell SegmentationDenoising	—Unverified
A Foundation Model for Cell Segmentation	Nov 18, 2023	Cell Segmentationmodel	—Unverified
Defining the boundaries: challenges and advances in identifying cells in microscopy images	Nov 14, 2023	Cell SegmentationSegmentation	—Unverified
DistNet2D: Leveraging long-range temporal information for efficient segmentation and tracking	Oct 30, 2023	Cell SegmentationData Visualization	—Unverified
CUPre: Cross-domain Unsupervised Pre-training for Few-Shot Cell Segmentation	Oct 6, 2023	Cell SegmentationContrastive Learning	—Unverified
Attention De-sparsification Matters: Inducing Diversity in Digital Pathology Representation Learning	Sep 12, 2023	Cell SegmentationDiversity	—Unverified
Semi-supervised Instance Segmentation with a Learned Shape Prior	Sep 9, 2023	Cell SegmentationInstance Segmentation	—Unverified

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified