Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 71–80 of 178 papers

Title	Date	Tasks	Status	Score
Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation	Aug 17, 2023	Cell SegmentationDiagnostic	CodeCode Available	5
An expert-driven data generation pipeline for histological images	Jun 3, 2024	Cell SegmentationInstance Segmentation	CodeCode Available	5
Cellpose+, a morphological analysis tool for feature extraction of stained cell images	Oct 24, 2024	Cell SegmentationImage Segmentation	CodeCode Available	5
EmbedTrack -- Simultaneous Cell Segmentation and Tracking Through Learning Offsets and Clustering Bandwidths	Apr 22, 2022	Cell SegmentationCell Tracking	CodeCode Available	5
A New Approach for Segmentation and Quantification of Cells or Nanoparticles	Mar 14, 2016	Cell SegmentationSegmentation	CodeCode Available	5
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation	Jan 10, 2023	Cell SegmentationSegmentation	CodeCode Available	5
EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware Pseudocoloring	Apr 6, 2022	Cell SegmentationCell Tracking	CodeCode Available	5
Knowing What to Label for Few Shot Microscopy Image Cell Segmentation	Nov 18, 2022	Cell Segmentation	CodeCode Available	5
IRNet: Instance Relation Network for Overlapping Cervical Cell Segmentation	Aug 19, 2019	Cell SegmentationInstance Segmentation	CodeCode Available	5
Medical Image Segmentation Using Directional Window Attention	Jun 25, 2024	Cell SegmentationDiagnostic	CodeCode Available	5

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified