Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 71–80 of 178 papers

Title	Date	Tasks	Status	Hype
Point-supervised Single-cell Segmentation via Collaborative Knowledge Sharing	Apr 20, 2023	Cell Segmentationobject-detection	CodeCode Available	1
An Instance Segmentation Dataset of Yeast Cells in Microstructures	Apr 15, 2023	Cell SegmentationImage Segmentation	CodeCode Available	1
Advanced Multi-Microscopic Views Cell Semi-supervised Segmentation	Mar 21, 2023	Cell SegmentationSegmentation	—Unverified	0
SpaceTx: A Roadmap for Benchmarking Spatial Transcriptomics Exploration of the Brain	Jan 20, 2023	BenchmarkingCell Segmentation	—Unverified	0
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation	Jan 10, 2023	Cell SegmentationSegmentation	CodeCode Available	0
MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy	Dec 7, 2022	Cell SegmentationElectron Microscopy Image Segmentation	CodeCode Available	1
Double U-Net for Super-Resolution and Segmentation of Live Cell Images	Dec 5, 2022	Cell SegmentationSegmentation	—Unverified	0
Uncertainty-Aware Contour Proposal Networks for Cell Segmentation in Multi-Modality High-Resolution Microscopy Images	Nov 30, 2022	Cell SegmentationInstance Segmentation	CodeCode Available	1
Knowing What to Label for Few Shot Microscopy Image Cell Segmentation	Nov 18, 2022	Cell Segmentation	CodeCode Available	0
Learning Melanocytic Cell Masks from Adjacent Stained Tissue	Nov 1, 2022	Cell SegmentationSegmentation	—Unverified	0

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified