Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 61–70 of 178 papers

Title	Date	Tasks	Status	Score
A Novel Deep Learning Approach Featuring Graph-Based Algorithm for Cell Segmentation and Tracking	Jan 18, 2024	Cell DetectionCell Segmentation	CodeCode Available	5
Medical Image Segmentation Using Directional Window Attention	Jun 25, 2024	Cell SegmentationDiagnostic	CodeCode Available	5
Multiclass Yeast Segmentation in Microstructured Environments with Deep Learning	Nov 16, 2020	Cell SegmentationDeep Learning	CodeCode Available	5
Recovering the Imperfect: Cell Segmentation in the Presence of Dynamically Localized Proteins	Nov 20, 2020	Cell SegmentationDecision Making Under Uncertainty	CodeCode Available	5
CellTrack R-CNN: A Novel End-To-End Deep Neural Network for Cell Segmentation and Tracking in Microscopy Images	Feb 20, 2021	Cell DetectionCell Segmentation	CodeCode Available	5
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation	Jan 10, 2023	Cell SegmentationSegmentation	CodeCode Available	5
Knowing What to Label for Few Shot Microscopy Image Cell Segmentation	Nov 18, 2022	Cell Segmentation	CodeCode Available	5
Annotated Biomedical Video Generation using Denoising Diffusion Probabilistic Models and Flow Fields	Mar 26, 2024	Cell SegmentationDenoising	CodeCode Available	5
Cell Segmentation by Combining Marker-Controlled Watershed and Deep Learning	Apr 3, 2020	Cell DetectionCell Segmentation	CodeCode Available	5
Cell Segmentation and Tracking using CNN-Based Distance Predictions and a Graph-Based Matching Strategy	Apr 3, 2020	Cell SegmentationCell Tracking	CodeCode Available	5

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified