Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 61–70 of 178 papers

Title	Date	Tasks	Status	Hype
Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation	Aug 17, 2023	Cell SegmentationDiagnostic	CodeCode Available	0
The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions	Aug 10, 2023	Cell SegmentationSegmentation	—Unverified	0
Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps	Aug 8, 2023	Cell SegmentationCell Tracking	CodeCode Available	1
To pretrain or not to pretrain? A case study of domain-specific pretraining for semantic segmentation in histopathology	Jul 6, 2023	Cell SegmentationSegmentation	CodeCode Available	0
CellViT: Vision Transformers for Precise Cell Segmentation and Classification	Jun 27, 2023	Cell DetectionCell Segmentation	CodeCode Available	2
Scribble-supervised Cell Segmentation Using Multiscale Contrastive Regularization	Jun 25, 2023	Cell SegmentationImage Segmentation	CodeCode Available	0
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered Learning	May 31, 2023	Cell SegmentationImage Segmentation	CodeCode Available	0
Towards Early Prediction of Human iPSC Reprogramming Success	May 23, 2023	Cell SegmentationPrediction	CodeCode Available	0
Impact of Image Compression on In Vitro Cell Migration Analysis	May 4, 2023	Cell SegmentationImage Compression	—Unverified	0
PhagoStat a scalable and interpretable end to end framework for efficient quantification of cell phagocytosis in neurodegenerative disease studies	Apr 26, 2023	Cell Segmentation	CodeCode Available	0

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified