Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 51–60 of 178 papers

Title	Date	Tasks	Status	Score
Comparison-Based Convolutional Neural Networks for Cervical Cell/Clumps Detection in the Limited Data Scenario	Oct 14, 2018	Cell SegmentationFew-Shot Learning	CodeCode Available	5
IRNet: Instance Relation Network for Overlapping Cervical Cell Segmentation	Aug 19, 2019	Cell SegmentationInstance Segmentation	CodeCode Available	5
COIN: Confidence Score-Guided Distillation for Annotation-Free Cell Segmentation	Mar 14, 2025	Cell SegmentationInstance Segmentation	CodeCode Available	5
Knowing What to Label for Few Shot Microscopy Image Cell Segmentation	Nov 18, 2022	Cell Segmentation	CodeCode Available	5
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation	Jan 10, 2023	Cell SegmentationSegmentation	CodeCode Available	5
Applying Faster R-CNN for Object Detection on Malaria Images	Apr 25, 2018	Cell SegmentationObject	CodeCode Available	5
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images	Jan 28, 2024	Cell SegmentationMedical Image Analysis	CodeCode Available	5
Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy Images	Oct 18, 2024	Cell SegmentationElectron Microscopy Image Segmentation	CodeCode Available	5
CE-Net: Context Encoder Network for 2D Medical Image Segmentation	Mar 7, 2019	Cell SegmentationDecoder	CodeCode Available	5
Accurate 3D Cell Segmentation using Deep Feature and CRF Refinement	Feb 13, 2019	Cell SegmentationSegmentation	CodeCode Available	5

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified