Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

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Showing 51–60 of 178 papers

Title	Date	Tasks	Status
Self-Attention Diffusion Models for Zero-Shot Biomedical Image Segmentation: Unlocking New Frontiers in Medical Imaging	Mar 23, 2025	Cell SegmentationDiagnostic	—Unverified
COIN: Confidence Score-Guided Distillation for Annotation-Free Cell Segmentation	Mar 14, 2025	Cell SegmentationInstance Segmentation	CodeCode Available
CASC-AI: Consensus-aware Self-corrective AI Agents for Noise Cell Segmentation	Feb 11, 2025	AI AgentCell Segmentation	CodeCode Available
Segmentation-free integration of nuclei morphology and spatial transcriptomics for retinal images	Feb 8, 2025	Cell SegmentationSegmentation	CodeCode Available
Geometric Framework for Cell Oversegmentation	Feb 3, 2025	Binary ClassificationCell Segmentation	—Unverified
Single cell resolution 3D imaging and segmentation within intact live tissues	Jan 31, 2025	Cell SegmentationSegmentation	CodeCode Available
Progressive Vision-Language Prompt for Multi-Organ Multi-Class Cell Semantic Segmentation with Single Branch	Dec 4, 2024	Cell SegmentationSegmentation	—Unverified
Cascaded Diffusion Models for 2D and 3D Microscopy Image Synthesis to Enhance Cell Segmentation	Nov 18, 2024	Cell SegmentationImage Generation	CodeCode Available
Interpretable Embeddings for Segmentation-Free Single-Cell Analysis in Multiplex Imaging	Nov 2, 2024	Cell Segmentationfeature selection	—Unverified
Cellpose+, a morphological analysis tool for feature extraction of stained cell images	Oct 24, 2024	Cell SegmentationImage Segmentation	CodeCode Available

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified