Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 41–50 of 178 papers

Title	Date	Tasks	Status	Hype	Score
An Instance Segmentation Dataset of Yeast Cells in Microstructures	Apr 15, 2023	Cell SegmentationImage Segmentation	CodeCode Available	1	5
Fully Unsupervised Diversity Denoising with Convolutional Variational Autoencoders	Jun 10, 2020	Cell SegmentationDenoising	CodeCode Available	1	5
TSFD-Net: Tissue specific feature distillation network for nuclei segmentation and classification	Mar 9, 2022	Cell SegmentationClassification	CodeCode Available	1	5
Scribble2Label: Scribble-Supervised Cell Segmentation via Self-Generating Pseudo-Labels with Consistency	Jun 23, 2020	Cell SegmentationSegmentation	CodeCode Available	1	5
Analysis of the performance of U-Net neural networks for the segmentation of living cells	Oct 4, 2022	Cell SegmentationCell Tracking	CodeCode Available	0	5
aura-net : robust segmentation of phase-contrast microscopy images with few annotations	Feb 2, 2021	Cell SegmentationSegmentation	CodeCode Available	0	5
IRNet: Instance Relation Network for Overlapping Cervical Cell Segmentation	Aug 19, 2019	Cell SegmentationInstance Segmentation	CodeCode Available	0	5
Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy Images	Oct 18, 2024	Cell SegmentationElectron Microscopy Image Segmentation	CodeCode Available	0	5
Knowing What to Label for Few Shot Microscopy Image Cell Segmentation	Nov 18, 2022	Cell Segmentation	CodeCode Available	0	5
Guided Prompting in SAM for Weakly Supervised Cell Segmentation in Histopathological Images	Nov 29, 2023	Cell SegmentationImage Segmentation	CodeCode Available	0	5

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified