Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 41–50 of 178 papers

Title	Date	Tasks	Status	Hype
Annotated Biomedical Video Generation using Denoising Diffusion Probabilistic Models and Flow Fields	Mar 26, 2024	Cell SegmentationDenoising	CodeCode Available	0
StainDiffuser: MultiTask Dual Diffusion Model for Virtual Staining	Mar 17, 2024	Cell SegmentationDiagnostic	—Unverified	0
Pushing the limits of cell segmentation models for imaging mass cytometry	Feb 6, 2024	Cell SegmentationSegmentation	CodeCode Available	0
FDNet: Frequency Domain Denoising Network For Cell Segmentation in Astrocytes Derived From Induced Pluripotent Stem Cells	Feb 5, 2024	Cell SegmentationDenoising	—Unverified	0
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images	Jan 28, 2024	Cell SegmentationMedical Image Analysis	CodeCode Available	0
A Novel Deep Learning Approach Featuring Graph-Based Algorithm for Cell Segmentation and Tracking	Jan 18, 2024	Cell DetectionCell Segmentation	CodeCode Available	0
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation	Jan 9, 2024	Cell SegmentationImage Segmentation	CodeCode Available	2
Morphological Profiling for Drug Discovery in the Era of Deep Learning	Dec 13, 2023	Cell SegmentationDeep Learning	—Unverified	0
CellMixer: Annotation-free Semantic Cell Segmentation of Heterogeneous Cell Populations	Dec 1, 2023	Cell SegmentationInstance Segmentation	—Unverified	0
Guided Prompting in SAM for Weakly Supervised Cell Segmentation in Histopathological Images	Nov 29, 2023	Cell SegmentationImage Segmentation	CodeCode Available	0

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified