SOTAVerified

Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

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Showing 151–178 of 178 papers

TitleStatusHype
Accurate 3D Cell Segmentation using Deep Feature and CRF RefinementCode0
Segmentation-free integration of nuclei morphology and spatial transcriptomics for retinal imagesCode0
EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware PseudocoloringCode0
DISCo: Deep learning, Instance Segmentation, and Correlations for cell segmentation in calcium imagingCode0
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered LearningCode0
Medical Image Segmentation Using Directional Window AttentionCode0
Microscopy Cell Segmentation via Convolutional LSTM NetworksCode0
Microscopy Cell Segmentation via Adversarial Neural NetworksCode0
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological imagesCode0
Yeast cell segmentation in microstructured environments with deep learningCode0
To pretrain or not to pretrain? A case study of domain-specific pretraining for semantic segmentation in histopathologyCode0
MorphoSeg: An Uncertainty-Aware Deep Learning Method for Biomedical Segmentation of Complex Cellular MorphologiesCode0
Multiclass Yeast Segmentation in Microstructured Environments with Deep LearningCode0
aura-net : robust segmentation of phase-contrast microscopy images with few annotationsCode0
Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding BoxesCode0
Comparison-Based Convolutional Neural Networks for Cervical Cell/Clumps Detection in the Limited Data ScenarioCode0
Towards Early Prediction of Human iPSC Reprogramming SuccessCode0
A Novel Deep Learning Approach Featuring Graph-Based Algorithm for Cell Segmentation and TrackingCode0
COIN: Confidence Score-Guided Distillation for Annotation-Free Cell SegmentationCode0
CE-Net: Context Encoder Network for 2D Medical Image SegmentationCode0
Semi-Automatic Generation of Tight Binary Masks and Non-Convex Isosurfaces for Quantitative Analysis of 3D Biological SamplesCode0
Annotated Biomedical Video Generation using Denoising Diffusion Probabilistic Models and Flow FieldsCode0
PhagoStat a scalable and interpretable end to end framework for efficient quantification of cell phagocytosis in neurodegenerative disease studiesCode0
An expert-driven data generation pipeline for histological imagesCode0
CellTrack R-CNN: A Novel End-To-End Deep Neural Network for Cell Segmentation and Tracking in Microscopy ImagesCode0
Cell Segmentation by Combining Marker-Controlled Watershed and Deep LearningCode0
Single cell resolution 3D imaging and segmentation within intact live tissuesCode0
A New Approach for Segmentation and Quantification of Cells or NanoparticlesCode0
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All datasetsFluo-N2DL-HeLaLIVECellDIC-C2DH-HeLaEVICANFluo-N2DH-GOWT1Fluo-N2DH-SIM+CoNSePFluo-C3DL-MDA231MoNuSegPanNukePhC-C2DH-U373

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1Dual U-Net (Neighbor distances)SEG (~Mean IoU)0.9—Unverified
2DecLSTMSEG (~Mean IoU)0.84—Unverified
3EncLSTMSEG (~Mean IoU)0.81—Unverified
#ModelMetricClaimedVerifiedStatus
1Cascade Mask RCNN-ResNest-200mask AP47.9—Unverified
2CenterMask-VoVNet2-FPNmask AP47.8—Unverified
3Point2Maskmask AP43.53—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.79—Unverified
2DecLSTMSEG (~Mean IoU)0.51—Unverified
#ModelMetricClaimedVerifiedStatus
1DeepCeNSmask AP52.56—Unverified
2EVICAN-MRCNNmask AP32.2—Unverified
#ModelMetricClaimedVerifiedStatus
1DecLSTMSEG (~Mean IoU)0.85—Unverified
2EncLSTMSEG (~Mean IoU)0.85—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.81—Unverified
2DecLSTMSEG (~Mean IoU)0.8—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.86—Unverified
#ModelMetricClaimedVerifiedStatus
1Dual U-Net (Neighbor distances)SEG (~Mean IoU)0.62—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.84—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.86—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.84—Unverified