Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 31–40 of 178 papers

Title	Date	Tasks	Status	Hype	Score
Instance Segmentation of Biomedical Images with an Object-aware Embedding Learned with Local Constraints	Apr 21, 2020	Cell SegmentationInstance Segmentation	CodeCode Available	1	5
CellVTA: Enhancing Vision Foundation Models for Accurate Cell Segmentation and Classification	Apr 1, 2025	Cell SegmentationInstance Segmentation	CodeCode Available	1	5
Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps	Aug 8, 2023	Cell SegmentationCell Tracking	CodeCode Available	1	5
Few-Shot Microscopy Image Cell Segmentation	Jun 29, 2020	Cell SegmentationFew-Shot Learning	CodeCode Available	1	5
Faster Mean-shift: GPU-accelerated clustering for cosine embedding-based cell segmentation and tracking	Jul 28, 2020	Cell SegmentationCell Tracking	CodeCode Available	1	5
HistoSmith: Single-Stage Histology Image-Label Generation via Conditional Latent Diffusion for Enhanced Cell Segmentation and Classification	Feb 12, 2025	Cell SegmentationImage Generation	CodeCode Available	1	5
Accurate and versatile 3D segmentation of plant tissues at cellular resolution	Jul 29, 2020	Cell Segmentationgraph partitioning	CodeCode Available	1	5
Local Label Point Correction for Edge Detection of Overlapping Cervical Cells	Oct 5, 2020	Cell SegmentationEdge Detection	CodeCode Available	1	5
CellSeg1: Robust Cell Segmentation with One Training Image	Dec 2, 2024	Cell SegmentationSegmentation	CodeCode Available	1	5
ICOS Protein Expression Segmentation: Can Transformer Networks Give Better Results?	Jun 23, 2022	Cell Segmentation	CodeCode Available	1	5

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified