Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 31–40 of 178 papers

Title	Date	Tasks	Status	Hype
Robust 3D Cell Segmentation: Extending the View of Cellpose	May 3, 2021	Cell SegmentationInstance Segmentation	CodeCode Available	1
Contour Proposal Networks for Biomedical Instance Segmentation	Apr 7, 2021	Blood Cell DetectionCell Detection	CodeCode Available	1
Red Blood Cell Segmentation with Overlapping Cell Separation and Classification on Imbalanced Dataset	Dec 2, 2020	Cell SegmentationClassification	CodeCode Available	1
Attention-Based Transformers for Instance Segmentation of Cells in Microstructures	Nov 19, 2020	Cell DetectionCell Segmentation	CodeCode Available	1
Local Label Point Correction for Edge Detection of Overlapping Cervical Cells	Oct 5, 2020	Cell SegmentationEdge Detection	CodeCode Available	1
Accurate and versatile 3D segmentation of plant tissues at cellular resolution	Jul 29, 2020	Cell Segmentationgraph partitioning	CodeCode Available	1
Faster Mean-shift: GPU-accelerated clustering for cosine embedding-based cell segmentation and tracking	Jul 28, 2020	Cell SegmentationCell Tracking	CodeCode Available	1
Few-Shot Microscopy Image Cell Segmentation	Jun 29, 2020	Cell SegmentationFew-Shot Learning	CodeCode Available	1
Scribble2Label: Scribble-Supervised Cell Segmentation via Self-Generating Pseudo-Labels with Consistency	Jun 23, 2020	Cell SegmentationSegmentation	CodeCode Available	1
Fully Unsupervised Diversity Denoising with Convolutional Variational Autoencoders	Jun 10, 2020	Cell SegmentationDenoising	CodeCode Available	1

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified