SOTAVerified

Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

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Showing 101–150 of 178 papers

TitleStatusHype
Multimodal Alignment of Histopathological Images Using Cell Segmentation and Point Set Matching for Integrative Cancer Analysis—0
Neural Stain Normalization and Unsupervised Classification of Cell Nuclei in Histopathological Breast Cancer Images—0
Nuclei Detection Using Mixture Density Networks—0
Open Source Infrastructure for Automatic Cell Segmentation—0
Panoptic Segmentation with an End-to-End Cell R-CNN for Pathology Image Analysis—0
Point2Mask: A Weakly Supervised Approach for Cell Segmentation Using Point Annotation—0
Prior-guided Diffusion Model for Cell Segmentation in Quantitative Phase Imaging—0
Progressive Vision-Language Prompt for Multi-Organ Multi-Class Cell Semantic Segmentation with Single Branch—0
Quantifying the effect of image compression on supervised learning applications in optical microscopy—0
QANet -- Quality Assurance Network for Image Segmentation—0
Reinforced Correlation Between Vision and Language for Precise Medical AI Assistant—0
Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Image—0
Robust neural circuit reconstruction from serial electron microscopy with convolutional recurrent networks—0
Scale Equivariant U-Net—0
SEGMENT3D: A Web-based Application for Collaborative Segmentation of 3D images used in the Shoot Apical Meristem—0
Segmentation of Clustered Nuclei With Shape Markers and Marking Function—0
Segmentation of Microscopy Data for finding Nuclei in Divergent Images—0
Self-Attention Diffusion Models for Zero-Shot Biomedical Image Segmentation: Unlocking New Frontiers in Medical Imaging—0
Self-distillation Augmented Masked Autoencoders for Histopathological Image Classification—0
Semi-supervised Instance Segmentation with a Learned Shape Prior—0
SHADHO: Massively Scalable Hardware-Aware Distributed Hyperparameter Optimization—0
SpaceTx: A Roadmap for Benchmarking Spatial Transcriptomics Exploration of the Brain—0
Spherical Harmonics for Shape-Constrained 3D Cell Segmentation—0
StainDiffuser: MultiTask Dual Diffusion Model for Virtual Staining—0
The Candidate Multi-Cut for Cell Segmentation—0
The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions—0
Three-Dimensional GPU-Accelerated Active Contours for Automated Localization of Cells in Large Images—0
Unsupervised Domain Adaptation for the Histopathological Cell Segmentation through Self-Ensembling—0
Unsupervised Segmentation of Overlapping Cervical Cell Cytoplasm—0
Weakly Supervised Multi-Task Learning for Cell Detection and Segmentation—0
Prompting Vision-Language Model for Nuclei Instance Segmentation and ClassificationCode0
Pushing the limits of cell segmentation models for imaging mass cytometryCode0
An Automatic Nuclei Image Segmentation Based on Multi-Scale Split-Attention U-NetCode0
Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy ImagesCode0
Recovering the Imperfect: Cell Segmentation in the Presence of Dynamically Localized ProteinsCode0
Cell Segmentation and Tracking using CNN-Based Distance Predictions and a Graph-Based Matching StrategyCode0
Analysis of the performance of U-Net neural networks for the segmentation of living cellsCode0
Cellpose+, a morphological analysis tool for feature extraction of stained cell imagesCode0
Superadditivity and Convex Optimization for Globally Optimal Cell Segmentation using Deformable Shape ModelsCode0
Applying Faster R-CNN for Object Detection on Malaria ImagesCode0
Unsupervised cell segmentation by fast Gaussian ProcessesCode0
Guided Prompting in SAM for Weakly Supervised Cell Segmentation in Histopathological ImagesCode0
Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle RepresentationCode0
CASC-AI: Consensus-aware Self-corrective AI Agents for Noise Cell SegmentationCode0
IRNet: Instance Relation Network for Overlapping Cervical Cell SegmentationCode0
Knowing What to Label for Few Shot Microscopy Image Cell SegmentationCode0
EmbedTrack -- Simultaneous Cell Segmentation and Tracking Through Learning Offsets and Clustering BandwidthsCode0
Scribble-supervised Cell Segmentation Using Multiscale Contrastive RegularizationCode0
Cascaded Diffusion Models for 2D and 3D Microscopy Image Synthesis to Enhance Cell SegmentationCode0
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentationCode0
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All datasetsFluo-N2DL-HeLaLIVECellDIC-C2DH-HeLaEVICANFluo-N2DH-GOWT1Fluo-N2DH-SIM+CoNSePFluo-C3DL-MDA231MoNuSegPanNukePhC-C2DH-U373

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1Dual U-Net (Neighbor distances)SEG (~Mean IoU)0.9—Unverified
2DecLSTMSEG (~Mean IoU)0.84—Unverified
3EncLSTMSEG (~Mean IoU)0.81—Unverified
#ModelMetricClaimedVerifiedStatus
1Cascade Mask RCNN-ResNest-200mask AP47.9—Unverified
2CenterMask-VoVNet2-FPNmask AP47.8—Unverified
3Point2Maskmask AP43.53—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.79—Unverified
2DecLSTMSEG (~Mean IoU)0.51—Unverified
#ModelMetricClaimedVerifiedStatus
1DeepCeNSmask AP52.56—Unverified
2EVICAN-MRCNNmask AP32.2—Unverified
#ModelMetricClaimedVerifiedStatus
1DecLSTMSEG (~Mean IoU)0.85—Unverified
2EncLSTMSEG (~Mean IoU)0.85—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.81—Unverified
2DecLSTMSEG (~Mean IoU)0.8—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.86—Unverified
#ModelMetricClaimedVerifiedStatus
1Dual U-Net (Neighbor distances)SEG (~Mean IoU)0.62—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.84—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.86—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.84—Unverified