SOTAVerified

Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

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Showing 51–75 of 178 papers

TitleStatusHype
Comparison-Based Convolutional Neural Networks for Cervical Cell/Clumps Detection in the Limited Data ScenarioCode0
Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding BoxesCode0
COIN: Confidence Score-Guided Distillation for Annotation-Free Cell SegmentationCode0
Applying Faster R-CNN for Object Detection on Malaria ImagesCode0
CE-Net: Context Encoder Network for 2D Medical Image SegmentationCode0
Accurate 3D Cell Segmentation using Deep Feature and CRF RefinementCode0
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological imagesCode0
Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy ImagesCode0
A Novel Deep Learning Approach Featuring Graph-Based Algorithm for Cell Segmentation and TrackingCode0
Multiclass Yeast Segmentation in Microstructured Environments with Deep LearningCode0
PhagoStat a scalable and interpretable end to end framework for efficient quantification of cell phagocytosis in neurodegenerative disease studiesCode0
CellTrack R-CNN: A Novel End-To-End Deep Neural Network for Cell Segmentation and Tracking in Microscopy ImagesCode0
Microscopy Cell Segmentation via Convolutional LSTM NetworksCode0
Annotated Biomedical Video Generation using Denoising Diffusion Probabilistic Models and Flow FieldsCode0
Medical Image Segmentation Using Directional Window AttentionCode0
Microscopy Cell Segmentation via Adversarial Neural NetworksCode0
Cell Segmentation by Combining Marker-Controlled Watershed and Deep LearningCode0
Cell Segmentation and Tracking using CNN-Based Distance Predictions and a Graph-Based Matching StrategyCode0
An expert-driven data generation pipeline for histological imagesCode0
Cellpose+, a morphological analysis tool for feature extraction of stained cell imagesCode0
A New Approach for Segmentation and Quantification of Cells or NanoparticlesCode0
Knowing What to Label for Few Shot Microscopy Image Cell SegmentationCode0
EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware PseudocoloringCode0
IRNet: Instance Relation Network for Overlapping Cervical Cell SegmentationCode0
CASC-AI: Consensus-aware Self-corrective AI Agents for Noise Cell SegmentationCode0
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All datasetsFluo-N2DL-HeLaLIVECellDIC-C2DH-HeLaEVICANFluo-N2DH-GOWT1Fluo-N2DH-SIM+CoNSePFluo-C3DL-MDA231MoNuSegPanNukePhC-C2DH-U373

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1Dual U-Net (Neighbor distances)SEG (~Mean IoU)0.9—Unverified
2DecLSTMSEG (~Mean IoU)0.84—Unverified
3EncLSTMSEG (~Mean IoU)0.81—Unverified
#ModelMetricClaimedVerifiedStatus
1Cascade Mask RCNN-ResNest-200mask AP47.9—Unverified
2CenterMask-VoVNet2-FPNmask AP47.8—Unverified
3Point2Maskmask AP43.53—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.79—Unverified
2DecLSTMSEG (~Mean IoU)0.51—Unverified
#ModelMetricClaimedVerifiedStatus
1DeepCeNSmask AP52.56—Unverified
2EVICAN-MRCNNmask AP32.2—Unverified
#ModelMetricClaimedVerifiedStatus
1DecLSTMSEG (~Mean IoU)0.85—Unverified
2EncLSTMSEG (~Mean IoU)0.85—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.81—Unverified
2DecLSTMSEG (~Mean IoU)0.8—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.86—Unverified
#ModelMetricClaimedVerifiedStatus
1Dual U-Net (Neighbor distances)SEG (~Mean IoU)0.62—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.84—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.86—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.84—Unverified