Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 21–30 of 178 papers

Title	Date	Tasks	Status	Hype
Cellpose+, a morphological analysis tool for feature extraction of stained cell images	Oct 24, 2024	Cell SegmentationImage Segmentation	CodeCode Available	0
Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy Images	Oct 18, 2024	Cell SegmentationElectron Microscopy Image Segmentation	CodeCode Available	0
Multimodal Alignment of Histopathological Images Using Cell Segmentation and Point Set Matching for Integrative Cancer Analysis	Sep 30, 2024	Cell SegmentationGraph Matching	—Unverified	0
MorphoSeg: An Uncertainty-Aware Deep Learning Method for Biomedical Segmentation of Complex Cellular Morphologies	Sep 25, 2024	Cell SegmentationSegmentation	CodeCode Available	0
TTT-Unet: Enhancing U-Net with Test-Time Training Layers for Biomedical Image Segmentation	Sep 17, 2024	Cell SegmentationImage Segmentation	CodeCode Available	1
Open Source Infrastructure for Automatic Cell Segmentation	Sep 12, 2024	Cell SegmentationDrug Discovery	—Unverified	0
InstanSeg: an embedding-based instance segmentation algorithm optimized for accurate, efficient and portable cell segmentation	Aug 28, 2024	Cell SegmentationGPU	CodeCode Available	3
NuLite -- Lightweight and Fast Model for Nuclei Instance Segmentation and Classification	Aug 3, 2024	Cell DetectionCell Segmentation	CodeCode Available	1
Diffusion-driven lensless fiber endomicroscopic quantitative phase imaging towards digital pathology	Jul 26, 2024	AttributeCell Segmentation	—Unverified	0
LKCell: Efficient Cell Nuclei Instance Segmentation with Large Convolution Kernels	Jul 25, 2024	Cell SegmentationDecoder	CodeCode Available	1

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified