SOTAVerified

Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

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Showing 51–100 of 178 papers

TitleStatusHype
IRNet: Instance Relation Network for Overlapping Cervical Cell SegmentationCode0
Knowing What to Label for Few Shot Microscopy Image Cell SegmentationCode0
Applying Faster R-CNN for Object Detection on Malaria ImagesCode0
COIN: Confidence Score-Guided Distillation for Annotation-Free Cell SegmentationCode0
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentationCode0
An Automatic Nuclei Image Segmentation Based on Multi-Scale Split-Attention U-NetCode0
Comparison-Based Convolutional Neural Networks for Cervical Cell/Clumps Detection in the Limited Data ScenarioCode0
Medical Image Segmentation Using Directional Window AttentionCode0
Microscopy Cell Segmentation via Convolutional LSTM NetworksCode0
Microscopy Cell Segmentation via Adversarial Neural NetworksCode0
MorphoSeg: An Uncertainty-Aware Deep Learning Method for Biomedical Segmentation of Complex Cellular MorphologiesCode0
Multiclass Yeast Segmentation in Microstructured Environments with Deep LearningCode0
Accurate 3D Cell Segmentation using Deep Feature and CRF RefinementCode0
Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding BoxesCode0
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological imagesCode0
Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy ImagesCode0
aura-net : robust segmentation of phase-contrast microscopy images with few annotationsCode0
PhagoStat a scalable and interpretable end to end framework for efficient quantification of cell phagocytosis in neurodegenerative disease studiesCode0
A New Approach for Segmentation and Quantification of Cells or NanoparticlesCode0
Prompting Vision-Language Model for Nuclei Instance Segmentation and ClassificationCode0
Pushing the limits of cell segmentation models for imaging mass cytometryCode0
Cascaded Diffusion Models for 2D and 3D Microscopy Image Synthesis to Enhance Cell SegmentationCode0
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered LearningCode0
Recovering the Imperfect: Cell Segmentation in the Presence of Dynamically Localized ProteinsCode0
CASC-AI: Consensus-aware Self-corrective AI Agents for Noise Cell SegmentationCode0
An expert-driven data generation pipeline for histological imagesCode0
DISCo: Deep learning, Instance Segmentation, and Correlations for cell segmentation in calcium imagingCode0
Scribble-supervised Cell Segmentation Using Multiscale Contrastive RegularizationCode0
Segmentation-free integration of nuclei morphology and spatial transcriptomics for retinal imagesCode0
Cellpose+, a morphological analysis tool for feature extraction of stained cell imagesCode0
EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware PseudocoloringCode0
Semi-Automatic Generation of Tight Binary Masks and Non-Convex Isosurfaces for Quantitative Analysis of 3D Biological SamplesCode0
EmbedTrack -- Simultaneous Cell Segmentation and Tracking Through Learning Offsets and Clustering BandwidthsCode0
Single cell resolution 3D imaging and segmentation within intact live tissuesCode0
Cell Segmentation and Tracking using CNN-Based Distance Predictions and a Graph-Based Matching StrategyCode0
Cell Segmentation by Combining Marker-Controlled Watershed and Deep LearningCode0
Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle RepresentationCode0
Superadditivity and Convex Optimization for Globally Optimal Cell Segmentation using Deformable Shape ModelsCode0
Annotated Biomedical Video Generation using Denoising Diffusion Probabilistic Models and Flow FieldsCode0
To pretrain or not to pretrain? A case study of domain-specific pretraining for semantic segmentation in histopathologyCode0
Towards Early Prediction of Human iPSC Reprogramming SuccessCode0
Analysis of the performance of U-Net neural networks for the segmentation of living cellsCode0
SpaceTx: A Roadmap for Benchmarking Spatial Transcriptomics Exploration of the Brain—0
PixCell: A generative foundation model for digital histopathology images—0
Accurate Cell Segmentation in Digital Pathology Images via Attention Enforced Networks—0
Active Learning Enabled Low-cost Cell Image Segmentation Using Bounding Box Annotation—0
Advanced Multi-Microscopic Views Cell Semi-supervised Segmentation—0
Adversarial Domain Adaptation for Cell Segmentation—0
Adversarial Stain Transfer to Study the Effect of Color Variation on Cell Instance Segmentation—0
A Foundation Model for Cell Segmentation—0
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All datasetsFluo-N2DL-HeLaLIVECellDIC-C2DH-HeLaEVICANFluo-N2DH-GOWT1Fluo-N2DH-SIM+CoNSePFluo-C3DL-MDA231MoNuSegPanNukePhC-C2DH-U373

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1Dual U-Net (Neighbor distances)SEG (~Mean IoU)0.9—Unverified
2DecLSTMSEG (~Mean IoU)0.84—Unverified
3EncLSTMSEG (~Mean IoU)0.81—Unverified
#ModelMetricClaimedVerifiedStatus
1Cascade Mask RCNN-ResNest-200mask AP47.9—Unverified
2CenterMask-VoVNet2-FPNmask AP47.8—Unverified
3Point2Maskmask AP43.53—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.79—Unverified
2DecLSTMSEG (~Mean IoU)0.51—Unverified
#ModelMetricClaimedVerifiedStatus
1DeepCeNSmask AP52.56—Unverified
2EVICAN-MRCNNmask AP32.2—Unverified
#ModelMetricClaimedVerifiedStatus
1DecLSTMSEG (~Mean IoU)0.85—Unverified
2EncLSTMSEG (~Mean IoU)0.85—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.81—Unverified
2DecLSTMSEG (~Mean IoU)0.8—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.86—Unverified
#ModelMetricClaimedVerifiedStatus
1Dual U-Net (Neighbor distances)SEG (~Mean IoU)0.62—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.84—Unverified
#ModelMetricClaimedVerifiedStatus
1PromptNuAverage Dice0.86—Unverified
#ModelMetricClaimedVerifiedStatus
1EncLSTMSEG (~Mean IoU)0.84—Unverified