Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 161–170 of 178 papers

Title	Date	Tasks	Status
Nuclei Detection Using Mixture Density Networks	Aug 22, 2018	Cell SegmentationImage-Variation	—Unverified
Segmentation of Microscopy Data for finding Nuclei in Divergent Images	Aug 19, 2018	Cell SegmentationImage Segmentation	—Unverified
DeepSDCS: Dissecting cancer proliferation heterogeneity in Ki67 digital whole slide images	Jun 28, 2018	Cancer ClassificationCell Segmentation	—Unverified
Microscopy Cell Segmentation via Convolutional LSTM Networks	May 29, 2018	Cell SegmentationCell Tracking	CodeCode Available
Applying Faster R-CNN for Object Detection on Malaria Images	Apr 25, 2018	Cell SegmentationObject	CodeCode Available
Three-Dimensional GPU-Accelerated Active Contours for Automated Localization of Cells in Large Images	Apr 17, 2018	Cell SegmentationGPU	—Unverified
SEGMENT3D: A Web-based Application for Collaborative Segmentation of 3D images used in the Shoot Apical Meristem	Oct 26, 2017	Cell SegmentationImage Segmentation	—Unverified
Image Segmentation and Classification for Sickle Cell Disease using Deformable U-Net	Oct 23, 2017	Cell SegmentationClassification	—Unverified
Cell Segmentation in 3D Confocal Images using Supervoxel Merge-Forests with CNN-based Hypothesis Selection	Oct 18, 2017	Cell SegmentationSegmentation	—Unverified
Microscopy Cell Segmentation via Adversarial Neural Networks	Sep 18, 2017	Cell SegmentationSegmentation	CodeCode Available

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified