Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 141–150 of 178 papers

Title	Date	Tasks	Status
Unsupervised cell segmentation by fast Gaussian Processes	May 24, 2025	Cell SegmentationGaussian Processes	CodeCode Available
Guided Prompting in SAM for Weakly Supervised Cell Segmentation in Histopathological Images	Nov 29, 2023	Cell SegmentationImage Segmentation	CodeCode Available
Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation	Aug 17, 2023	Cell SegmentationDiagnostic	CodeCode Available
CASC-AI: Consensus-aware Self-corrective AI Agents for Noise Cell Segmentation	Feb 11, 2025	AI AgentCell Segmentation	CodeCode Available
IRNet: Instance Relation Network for Overlapping Cervical Cell Segmentation	Aug 19, 2019	Cell SegmentationInstance Segmentation	CodeCode Available
Knowing What to Label for Few Shot Microscopy Image Cell Segmentation	Nov 18, 2022	Cell Segmentation	CodeCode Available
EmbedTrack -- Simultaneous Cell Segmentation and Tracking Through Learning Offsets and Clustering Bandwidths	Apr 22, 2022	Cell SegmentationCell Tracking	CodeCode Available
Scribble-supervised Cell Segmentation Using Multiscale Contrastive Regularization	Jun 25, 2023	Cell SegmentationImage Segmentation	CodeCode Available
Cascaded Diffusion Models for 2D and 3D Microscopy Image Synthesis to Enhance Cell Segmentation	Nov 18, 2024	Cell SegmentationImage Generation	CodeCode Available
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation	Jan 10, 2023	Cell SegmentationSegmentation	CodeCode Available

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified