Cell Segmentation

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research. Cellular morphology is an indicator of a physiological state of the cell, and a well-segmented image can capture biologically relevant morphological information.

Source: Cell Segmentation by Combining Marker-controlled Watershed and Deep Learning

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 91–100 of 178 papers

Title	Date	Tasks	Status	Score
Towards Early Prediction of Human iPSC Reprogramming Success	May 23, 2023	Cell SegmentationPrediction	CodeCode Available	5
Analysis of the performance of U-Net neural networks for the segmentation of living cells	Oct 4, 2022	Cell SegmentationCell Tracking	CodeCode Available	5
SpaceTx: A Roadmap for Benchmarking Spatial Transcriptomics Exploration of the Brain	Jan 20, 2023	BenchmarkingCell Segmentation	—Unverified	0
PixCell: A generative foundation model for digital histopathology images	Jun 5, 2025	Cell SegmentationData Augmentation	—Unverified	0
Accurate Cell Segmentation in Digital Pathology Images via Attention Enforced Networks	Dec 14, 2020	Cell SegmentationColor Normalization	—Unverified	0
Active Learning Enabled Low-cost Cell Image Segmentation Using Bounding Box Annotation	May 2, 2024	Active LearningCell Segmentation	—Unverified	0
Advanced Multi-Microscopic Views Cell Semi-supervised Segmentation	Mar 21, 2023	Cell SegmentationSegmentation	—Unverified	0
Adversarial Domain Adaptation for Cell Segmentation	Jan 29, 2020	Cell SegmentationDomain Adaptation	—Unverified	0
Adversarial Stain Transfer to Study the Effect of Color Variation on Cell Instance Segmentation	Sep 1, 2022	Cell SegmentationColor Normalization	—Unverified	0
A Foundation Model for Cell Segmentation	Nov 18, 2023	Cell Segmentationmodel	—Unverified	0

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All datasets Fluo-N2DL-HeLa LIVECell DIC-C2DH-HeLa EVICAN Fluo-N2DH-GOWT1 Fluo-N2DH-SIM+CoNSeP Fluo-C3DL-MDA231 MoNuSeg PanNuke PhC-C2DH-U373

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.9	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.84	—	Unverified
3	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Cascade Mask RCNN-ResNest-200	mask AP	47.9	—	Unverified
2	CenterMask-VoVNet2-FPN	mask AP	47.8	—	Unverified
3	Point2Mask	mask AP	43.53	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.79	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.51	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DeepCeNS	mask AP	52.56	—	Unverified
2	EVICAN-MRCNN	mask AP	32.2	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DecLSTM	SEG (~Mean IoU)	0.85	—	Unverified
2	EncLSTM	SEG (~Mean IoU)	0.85	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.81	—	Unverified
2	DecLSTM	SEG (~Mean IoU)	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Dual U-Net (Neighbor distances)	SEG (~Mean IoU)	0.62	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.84	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	PromptNu	Average Dice	0.86	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	EncLSTM	SEG (~Mean IoU)	0.84	—	Unverified