SOTAVerified

Protein Secondary Structure Prediction

Protein secondary structure prediction is a vital task in bioinformatics, aiming to determine the arrangement of amino acids in proteins, including α-helices, β-sheets, and coils. By analyzing amino acid sequences, computational algorithms and machine learning techniques predict these structural elements. This knowledge is crucial for understanding protein function and interactions. While progress has been made, challenges remain, especially with non-local interactions and low sequence homology. Advancements in machine learning hold promise for improving prediction accuracy, furthering our understanding of protein biology.

Papers

Showing 110 of 26 papers

TitleStatusHype
ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance ComputingCode2
ProteinBERT: a universal deep-learning model of protein sequence and functionCode2
DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsCode1
PS4: a Next-Generation Dataset for Protein Single Sequence Secondary Structure PredictionCode1
ProteinNet: a standardized data set for machine learning of protein structureCode1
Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure PredictionCode0
Porter 5: fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classesCode0
High Quality Prediction of Protein Q8 Secondary Structure by Diverse Neural Network ArchitecturesCode0
Deeper Profiles and Cascaded Recurrent and Convolutional Neural Networks for state-of-the-art Protein Secondary Structure PredictionCode0
DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein SequencesCode0
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Benchmark Results

#ModelMetricClaimedVerifiedStatus
1DistilProtBertQ30.79Unverified
2PS4-MegaQ80.76Unverified
3PS4-ConvQ80.76Unverified
4ProtT5-XL-UniRef50Q80.74Unverified
5Porter5Q80.74Unverified
6Advanced ACNNQ80.73Unverified
7ProtT5-XL-BFDQ80.71Unverified
8ProtBert-BFDQ80.7Unverified
9ACNNQ80.7Unverified
10LucaAngioloni-WindowCNNQ80.68Unverified
#ModelMetricClaimedVerifiedStatus
1ProtT5-XL-UniRef50Q30.81Unverified
2ProtT5-XL-BFDQ30.77Unverified
3ProtBert-BFDQ30.76Unverified
4DistilProtBertQ30.72Unverified
#ModelMetricClaimedVerifiedStatus
1ProtT5-XL-UniRef50Q30.87Unverified
2ProtT5-XL-BFDQ30.85Unverified
3ProtBert-BFDQ30.84Unverified
4DistilProtBertQ30.81Unverified
#ModelMetricClaimedVerifiedStatus
1PS4-MegaQ80.78Unverified
2PS4-ConvQ80.78Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Q384.19Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Q381.74Unverified
#ModelMetricClaimedVerifiedStatus
1LucaAngioloni-WindowCNNQ80.72Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Accuracy84.62Unverified