SOTAVerified

Protein Secondary Structure Prediction

Protein secondary structure prediction is a vital task in bioinformatics, aiming to determine the arrangement of amino acids in proteins, including α-helices, β-sheets, and coils. By analyzing amino acid sequences, computational algorithms and machine learning techniques predict these structural elements. This knowledge is crucial for understanding protein function and interactions. While progress has been made, challenges remain, especially with non-local interactions and low sequence homology. Advancements in machine learning hold promise for improving prediction accuracy, furthering our understanding of protein biology.

Papers

Showing 110 of 26 papers

TitleStatusHype
Single-Sequence-Based Protein Secondary Structure Prediction using One-Hot and Chemical Encodings of Amino Acids0
A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration0
PS4: a Next-Generation Dataset for Protein Single Sequence Secondary Structure PredictionCode1
Convolutional ProteinUnetLM competitive with long short-term memory-based protein secondary structure predictorsCode0
Approximate Conditional Coverage & Calibration via Neural Model Approximations0
DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsCode1
ProteinBERT: a universal deep-learning model of protein sequence and functionCode2
Adaptive Residue-wise Profile Fusion for Low Homologous Protein SecondaryStructure Prediction Using External Knowledge0
DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein SequencesCode0
PS8-Net: A Deep Convolutional Neural Network to Predict the Eight-State Protein Secondary Structure0
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Benchmark Results

#ModelMetricClaimedVerifiedStatus
1DistilProtBertQ30.79Unverified
2PS4-MegaQ80.76Unverified
3PS4-ConvQ80.76Unverified
4ProtT5-XL-UniRef50Q80.74Unverified
5Porter5Q80.74Unverified
6Advanced ACNNQ80.73Unverified
7ProtT5-XL-BFDQ80.71Unverified
8ProtBert-BFDQ80.7Unverified
9ACNNQ80.7Unverified
10LucaAngioloni-WindowCNNQ80.68Unverified
#ModelMetricClaimedVerifiedStatus
1ProtT5-XL-UniRef50Q30.81Unverified
2ProtT5-XL-BFDQ30.77Unverified
3ProtBert-BFDQ30.76Unverified
4DistilProtBertQ30.72Unverified
#ModelMetricClaimedVerifiedStatus
1ProtT5-XL-UniRef50Q30.87Unverified
2ProtT5-XL-BFDQ30.85Unverified
3ProtBert-BFDQ30.84Unverified
4DistilProtBertQ30.81Unverified
#ModelMetricClaimedVerifiedStatus
1PS4-MegaQ80.78Unverified
2PS4-ConvQ80.78Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Q384.19Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Q381.74Unverified
#ModelMetricClaimedVerifiedStatus
1LucaAngioloni-WindowCNNQ80.72Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Accuracy84.62Unverified