SOTAVerified

Protein Secondary Structure Prediction

Protein secondary structure prediction is a vital task in bioinformatics, aiming to determine the arrangement of amino acids in proteins, including α-helices, β-sheets, and coils. By analyzing amino acid sequences, computational algorithms and machine learning techniques predict these structural elements. This knowledge is crucial for understanding protein function and interactions. While progress has been made, challenges remain, especially with non-local interactions and low sequence homology. Advancements in machine learning hold promise for improving prediction accuracy, furthering our understanding of protein biology.

Papers

Showing 110 of 26 papers

TitleStatusHype
ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance ComputingCode2
ProteinBERT: a universal deep-learning model of protein sequence and functionCode2
DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsCode1
PS4: a Next-Generation Dataset for Protein Single Sequence Secondary Structure PredictionCode1
ProteinNet: a standardized data set for machine learning of protein structureCode1
A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration0
Adaptive Residue-wise Profile Fusion for Low Homologous Protein SecondaryStructure Prediction Using External Knowledge0
Neural Edit Operations for Biological Sequences0
MUFold-SS: Protein Secondary Structure Prediction Using Deep Inception-Inside-Inception Networks0
Approximate Conditional Coverage & Calibration via Neural Model Approximations0
Show:102550
← PrevPage 1 of 3Next →

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1DistilProtBertQ30.79Unverified
2PS4-MegaQ80.76Unverified
3PS4-ConvQ80.76Unverified
4ProtT5-XL-UniRef50Q80.74Unverified
5Porter5Q80.74Unverified
6Advanced ACNNQ80.73Unverified
7ProtT5-XL-BFDQ80.71Unverified
8ProtBert-BFDQ80.7Unverified
9ACNNQ80.7Unverified
10LucaAngioloni-WindowCNNQ80.68Unverified
#ModelMetricClaimedVerifiedStatus
1ProtT5-XL-UniRef50Q30.81Unverified
2ProtT5-XL-BFDQ30.77Unverified
3ProtBert-BFDQ30.76Unverified
4DistilProtBertQ30.72Unverified
#ModelMetricClaimedVerifiedStatus
1ProtT5-XL-UniRef50Q30.87Unverified
2ProtT5-XL-BFDQ30.85Unverified
3ProtBert-BFDQ30.84Unverified
4DistilProtBertQ30.81Unverified
#ModelMetricClaimedVerifiedStatus
1PS4-MegaQ80.78Unverified
2PS4-ConvQ80.78Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Q384.19Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Q381.74Unverified
#ModelMetricClaimedVerifiedStatus
1LucaAngioloni-WindowCNNQ80.72Unverified
#ModelMetricClaimedVerifiedStatus
1Porter5Accuracy84.62Unverified