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Multiple Sequence Alignment

Papers

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Showing 26–50 of 54 papers

TitleStatusHype
Pre-training Co-evolutionary Protein Representation via A Pairwise Masked Language Model—0
Application of Sequence Embedding in Protein Sequence-Based Predictions—0
Neural Distance Embeddings for Biological SequencesCode1
MNHN-Tree-Tools: a toolbox for tree inference using multi-scale clustering of a set of sequencesCode0
MSA Transformer—0
DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein SequencesCode0
Pairwise heuristic sequence alignment algorithm based on deep reinforcement learning—0
Align-RUDDER: Learning From Few Demonstrations by Reward RedistributionCode1
Neural Time Warping For Multiple Sequence Alignment—0
Accurate Protein Structure Prediction by Embeddings and Deep Learning RepresentationsCode1
Boltzmann machine learning and regularization methods for inferring evolutionary fields and couplings from a multiple sequence alignment—0
Seq-SetNet: Exploring Sequence Sets for Inferring Structures—0
Privacy Preserving Location Data Publishing: A Machine Learning Approach—0
Influence of Multiple Sequence Alignment Depth on Potts Statistical Models of Protein Covariation—0
Multiple Sequence Alignment is not a Solved Problem—0
Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural networkCode0
Full Reconstruction of Non-Stationary Strand-Symmetric Models on Rooted Phylogenies—0
QuickProbs 2: towards rapid construction of high-quality alignments of large protein familiesCode0
Aligning 415 519 proteins in less than two hours on PC—0
Identifying relevant positions in proteins by Critical Variable Selection—0
Statistically-Consistent k-mer Methods for Phylogenetic Tree Reconstruction—0
Predicting diverse M-best protein contact maps—0
Multiple sequence alignment for short sequences—0
Liquid-theory analogy of direct-coupling analysis of multiple-sequence alignment and its implications for protein structure prediction—0
Ultra-large alignments using Phylogeny-aware ProfilesCode0
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All datasetsBAliBASE v3OXBenchSABMark v1.65

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score65.47—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score82.52—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score42.59—Unverified