SOTAVerified

Multiple Sequence Alignment

Papers

Recently AddedMost HypedMost ActiveNeeds VerificationMost Verified

Showing 1–50 of 54 papers

TitleStatusHype
Accurate Protein Structure Prediction by Embeddings and Deep Learning RepresentationsCode1
Exploring evolution-aware & -free protein language models as protein function predictorsCode1
PEvoLM: Protein Sequence Evolutionary Information Language ModelCode1
PoET: A generative model of protein families as sequences-of-sequencesCode1
Align-RUDDER: Learning From Few Demonstrations by Reward RedistributionCode1
MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-TrainingCode1
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-Efficient Genome AnalysisCode1
Neural Distance Embeddings for Biological SequencesCode1
Enhancing the Protein Tertiary Structure Prediction by Multiple Sequence Alignment GenerationCode1
Expert-guided protein language models enable accurate and blazingly fast fitness predictionCode1
ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learningCode0
Ultra-large alignments using Phylogeny-aware ProfilesCode0
QuickProbs 2: towards rapid construction of high-quality alignments of large protein familiesCode0
MNHN-Tree-Tools: a toolbox for tree inference using multi-scale clustering of a set of sequencesCode0
DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein SequencesCode0
Phylogenetic automata, pruning, and multiple alignmentCode0
Convolutional ProteinUnetLM competitive with long short-term memory-based protein secondary structure predictorsCode0
Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural networkCode0
Liquid-theory analogy of direct-coupling analysis of multiple-sequence alignment and its implications for protein structure prediction—0
Privacy Preserving Location Data Publishing: A Machine Learning Approach—0
MRFalign: Protein Homology Detection through Alignment of Markov Random Fields—0
MSA Transformer—0
Multiple sequence alignment for short sequences—0
Multiple Sequence Alignment is not a Solved Problem—0
Neural Time Warping For Multiple Sequence Alignment—0
Pairwise heuristic sequence alignment algorithm based on deep reinforcement learning—0
Pairwise sequence alignment at arbitrarily large evolutionary distance—0
PEACH Tree: A Multiple Sequence Alignment and Tree Display Tool for Epidemiologists—0
PenSLR: Persian end-to-end Sign Language Recognition Using Ensembling—0
Predicting diverse M-best protein contact maps—0
Pre-training Co-evolutionary Protein Representation via A Pairwise Masked Language Model—0
Riemannian Time Warping: Multiple Sequence Alignment in Curved Spaces—0
Seq-SetNet: Exploring Sequence Sets for Inferring Structures—0
Small Coupling Expansion for Multiple Sequence Alignment—0
State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences—0
Statistically-Consistent k-mer Methods for Phylogenetic Tree Reconstruction—0
Un nouvel algorithme pour la detection des transferts horizontaux de genes partiels entre les especes et pour la classification des transferts inferes—0
Advanced Deep Learning Methods for Protein Structure Prediction and Design—0
Aligning 415 519 proteins in less than two hours on PC—0
Aligning Speakers: Evaluating and Visualizing Text-based Diarization Using Efficient Multiple Sequence Alignment (Extended Version)—0
A Novel Method for Comparative Analysis of DNA Sequences by Ramanujan-Fourier Transform—0
Application of Sequence Embedding in Protein Sequence-Based Predictions—0
Boltzmann machine learning and regularization methods for inferring evolutionary fields and couplings from a multiple sequence alignment—0
ContactNet: Geometric-Based Deep Learning Model for Predicting Protein-Protein Interactions—0
CVTree for 16S rRNA: Constructing Taxonomy-Compatible All-Species Living Tree Effectively and Efficiently—0
Deep Time Warping for Multiple Time Series Alignment—0
Dynamic Programming Algorithms for Discovery of Antibiotic Resistance in Microbial Genomes—0
Efficient Inference in Phylogenetic InDel Trees—0
Few Shot Protein Generation—0
Full Reconstruction of Non-Stationary Strand-Symmetric Models on Rooted Phylogenies—0
Show:102550
← PrevPage 1 of 2Next →
All datasetsBAliBASE v3OXBenchSABMark v1.65

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score65.47—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score82.52—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score42.59—Unverified