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Multiple Sequence Alignment

Papers

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Showing 1–50 of 54 papers

TitleStatusHype
Enhancing the Protein Tertiary Structure Prediction by Multiple Sequence Alignment GenerationCode1
PEvoLM: Protein Sequence Evolutionary Information Language ModelCode1
Expert-guided protein language models enable accurate and blazingly fast fitness predictionCode1
Exploring evolution-aware & -free protein language models as protein function predictorsCode1
Neural Distance Embeddings for Biological SequencesCode1
Align-RUDDER: Learning From Few Demonstrations by Reward RedistributionCode1
MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-TrainingCode1
PoET: A generative model of protein families as sequences-of-sequencesCode1
Accurate Protein Structure Prediction by Embeddings and Deep Learning RepresentationsCode1
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-Efficient Genome AnalysisCode1
Dynamic Programming Algorithms for Discovery of Antibiotic Resistance in Microbial Genomes—0
Efficient Inference in Phylogenetic InDel Trees—0
Few Shot Protein Generation—0
Full Reconstruction of Non-Stationary Strand-Symmetric Models on Rooted Phylogenies—0
High Performance Multiple Sequence Alignment Algorithms for Comparison of Microbial Genomes—0
Identifying relevant positions in proteins by Critical Variable Selection—0
Influence of Multiple Sequence Alignment Depth on Potts Statistical Models of Protein Covariation—0
Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments—0
Liquid-theory analogy of direct-coupling analysis of multiple-sequence alignment and its implications for protein structure prediction—0
Privacy Preserving Location Data Publishing: A Machine Learning Approach—0
MRFalign: Protein Homology Detection through Alignment of Markov Random Fields—0
MSA Transformer—0
Multiple sequence alignment for short sequences—0
Multiple Sequence Alignment is not a Solved Problem—0
Un nouvel algorithme pour la detection des transferts horizontaux de genes partiels entre les especes et pour la classification des transferts inferes—0
Advanced Deep Learning Methods for Protein Structure Prediction and Design—0
Aligning 415 519 proteins in less than two hours on PC—0
Aligning Speakers: Evaluating and Visualizing Text-based Diarization Using Efficient Multiple Sequence Alignment (Extended Version)—0
A Novel Method for Comparative Analysis of DNA Sequences by Ramanujan-Fourier Transform—0
Application of Sequence Embedding in Protein Sequence-Based Predictions—0
Boltzmann machine learning and regularization methods for inferring evolutionary fields and couplings from a multiple sequence alignment—0
ContactNet: Geometric-Based Deep Learning Model for Predicting Protein-Protein Interactions—0
CVTree for 16S rRNA: Constructing Taxonomy-Compatible All-Species Living Tree Effectively and Efficiently—0
Deep Time Warping for Multiple Time Series Alignment—0
PenSLR: Persian end-to-end Sign Language Recognition Using Ensembling—0
Predicting diverse M-best protein contact maps—0
Pre-training Co-evolutionary Protein Representation via A Pairwise Masked Language Model—0
Riemannian Time Warping: Multiple Sequence Alignment in Curved Spaces—0
Seq-SetNet: Exploring Sequence Sets for Inferring Structures—0
Small Coupling Expansion for Multiple Sequence Alignment—0
State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences—0
Statistically-Consistent k-mer Methods for Phylogenetic Tree Reconstruction—0
Neural Time Warping For Multiple Sequence Alignment—0
Pairwise heuristic sequence alignment algorithm based on deep reinforcement learning—0
Pairwise sequence alignment at arbitrarily large evolutionary distance—0
PEACH Tree: A Multiple Sequence Alignment and Tree Display Tool for Epidemiologists—0
MNHN-Tree-Tools: a toolbox for tree inference using multi-scale clustering of a set of sequencesCode0
Phylogenetic automata, pruning, and multiple alignmentCode0
Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural networkCode0
DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein SequencesCode0
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All datasetsBAliBASE v3OXBenchSABMark v1.65

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score65.47—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score82.52—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score42.59—Unverified