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Multiple Sequence Alignment

Papers

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Showing 1–25 of 54 papers

TitleStatusHype
Expert-guided protein language models enable accurate and blazingly fast fitness predictionCode1
MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-TrainingCode1
PEvoLM: Protein Sequence Evolutionary Information Language ModelCode1
PoET: A generative model of protein families as sequences-of-sequencesCode1
Enhancing the Protein Tertiary Structure Prediction by Multiple Sequence Alignment GenerationCode1
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-Efficient Genome AnalysisCode1
Exploring evolution-aware & -free protein language models as protein function predictorsCode1
Neural Distance Embeddings for Biological SequencesCode1
Align-RUDDER: Learning From Few Demonstrations by Reward RedistributionCode1
Accurate Protein Structure Prediction by Embeddings and Deep Learning RepresentationsCode1
Riemannian Time Warping: Multiple Sequence Alignment in Curved Spaces—0
State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences—0
CVTree for 16S rRNA: Constructing Taxonomy-Compatible All-Species Living Tree Effectively and Efficiently—0
Advanced Deep Learning Methods for Protein Structure Prediction and Design—0
Deep Time Warping for Multiple Time Series Alignment—0
ContactNet: Geometric-Based Deep Learning Model for Predicting Protein-Protein Interactions—0
PenSLR: Persian end-to-end Sign Language Recognition Using Ensembling—0
ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learningCode0
Dynamic Programming Algorithms for Discovery of Antibiotic Resistance in Microbial Genomes—0
High Performance Multiple Sequence Alignment Algorithms for Comparison of Microbial Genomes—0
Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments—0
Aligning Speakers: Evaluating and Visualizing Text-based Diarization Using Efficient Multiple Sequence Alignment (Extended Version)—0
Convolutional ProteinUnetLM competitive with long short-term memory-based protein secondary structure predictorsCode0
Small Coupling Expansion for Multiple Sequence Alignment—0
Pairwise sequence alignment at arbitrarily large evolutionary distance—0
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All datasetsBAliBASE v3OXBenchSABMark v1.65

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score65.47—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score82.52—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score42.59—Unverified