Medical Image Segmentation

Medical Image Segmentation is a computer vision task that involves dividing an medical image into multiple segments, where each segment represents a different object or structure of interest in the image. The goal of medical image segmentation is to provide a precise and accurate representation of the objects of interest within the image, typically for the purpose of diagnosis, treatment planning, and quantitative analysis.

( Image credit: IVD-Net )

Papers

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Showing 101–125 of 2089 papers

Title	Date	Tasks	Status	Hype
Rethinking Boundary Detection in Deep Learning-Based Medical Image Segmentation	May 6, 2025	Boundary DetectionDecoder	CodeCode Available	2
Rethinking Semantic Segmentation from a Sequence-to-Sequence Perspective with Transformers	Dec 31, 2020	DecoderMedical Image Segmentation	CodeCode Available	2
FedFMS: Exploring Federated Foundation Models for Medical Image Segmentation	Mar 8, 2024	Federated LearningImage Segmentation	CodeCode Available	2
Generative Medical Segmentation	Mar 27, 2024	DecoderDomain Generalization	CodeCode Available	2
Learnable Prompting SAM-induced Knowledge Distillation for Semi-supervised Medical Image Segmentation	Dec 18, 2024	Image SegmentationKnowledge Distillation	CodeCode Available	2
Are Vision xLSTM Embedded UNet More Reliable in Medical 3D Image Segmentation?	Jun 24, 2024	Image SegmentationMedical Image Segmentation	CodeCode Available	2
EM-Net: Efficient Channel and Frequency Learning with Mamba for 3D Medical Image Segmentation	Sep 26, 2024	Image SegmentationMamba	CodeCode Available	2
ScribblePrompt: Fast and Flexible Interactive Segmentation for Any Biomedical Image	Dec 12, 2023	Image SegmentationInteractive Segmentation	CodeCode Available	2
Diversified and Personalized Multi-rater Medical Image Segmentation	Mar 20, 2024	Image SegmentationMedical Image Segmentation	CodeCode Available	2
EGE-UNet: an Efficient Group Enhanced UNet for skin lesion segmentation	Jul 17, 2023	DecoderImage Segmentation	CodeCode Available	2
ESP-MedSAM: Efficient Self-Prompting SAM for Universal Domain-Generalized Medical Image Segmentation	Jul 19, 2024	DecoderImage Segmentation	CodeCode Available	2
Seg-metrics: a Python package to compute segmentation metrics	Jan 12, 2024	Image SegmentationMedical Image Segmentation	CodeCode Available	2
Ambiguous Medical Image Segmentation using Diffusion Models	Apr 10, 2023	DiagnosticDiversity	CodeCode Available	2
SelfReg-UNet: Self-Regularized UNet for Medical Image Segmentation	Jun 21, 2024	DecoderImage Segmentation	CodeCode Available	2
Stable Diffusion Segmentation for Biomedical Images with Single-step Reverse Process	Jun 26, 2024	Image SegmentationMedical Image Segmentation	CodeCode Available	2
Understanding the Tricks of Deep Learning in Medical Image Segmentation: Challenges and Future Directions	Sep 21, 2022	Data AugmentationDomain Adaptation	CodeCode Available	2
Test-Time Adaptation with SaLIP: A Cascade of SAM and CLIP for Zero shot Medical Image Segmentation	Apr 9, 2024	Image SegmentationMedical Image Segmentation	CodeCode Available	2
Test-Time Domain Generalization via Universe Learning: A Multi-Graph Matching Approach for Medical Image Segmentation	Mar 17, 2025	Domain AdaptationDomain Generalization	CodeCode Available	2
TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation	Feb 8, 2021	Cardiac SegmentationDecoder	CodeCode Available	2
Tyche: Stochastic In-Context Learning for Medical Image Segmentation	Jan 24, 2024	Image SegmentationIn-Context Learning	CodeCode Available	2
DiffAtlas: GenAI-fying Atlas Segmentation via Image-Mask Diffusion	Mar 9, 2025	Image SegmentationMedical Image Segmentation	CodeCode Available	2
Cross-Modal Interactive Perception Network with Mamba for Lung Tumor Segmentation in PET-CT Images	Mar 21, 2025	Image SegmentationMamba	CodeCode Available	2
Constructing and Exploring Intermediate Domains in Mixed Domain Semi-supervised Medical Image Segmentation	Apr 13, 2024	Domain AdaptationImage Segmentation	CodeCode Available	2
Customized Segment Anything Model for Medical Image Segmentation	Apr 26, 2023	DecoderImage Segmentation	CodeCode Available	2
DiffRect: Latent Diffusion Label Rectification for Semi-supervised Medical Image Segmentation	Jul 13, 2024	DenoisingImage Segmentation	CodeCode Available	2

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All datasets Kvasir-SEG CVC-ClinicDB CVC-ColonDB ETIS-LARIBPOLYPDB Synapse multi-organ CT Automatic Cardiac Diagnosis Challenge (ACDC)MoNuSeg 2018 Data Science Bowl GlaS BKAI-IGH NeoPolyp-Small MICCAI 2015 Multi-Atlas Abdomen Labeling Challenge ACDC

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	DUCK-Net	mean Dice	0.95	—	Unverified
2	EffiSegNet-B5	mean Dice	0.95	—	Unverified
3	EffiSegNet-B4	mean Dice	0.95	—	Unverified
4	SegMed	mean Dice	0.95	—	Unverified
5	FCB Former	mean Dice	0.94	—	Unverified
6	FCB-SwinV2 Transformer	mean Dice	0.94	—	Unverified
7	SEP	mean Dice	0.94	—	Unverified
8	LM-Net	mean Dice	0.94	—	Unverified
9	RAPUNet	mean Dice	0.94	—	Unverified
10	FCBFormer	mean Dice	0.94	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	DUCK-Net	mean Dice	0.97	—	Unverified
2	RAPUNet	mean Dice	0.96	—	Unverified
3	EMCAD	mean Dice	0.95	—	Unverified
4	Yolo-SAM 2	mean Dice	0.95	—	Unverified
5	RaBiT	mean Dice	0.95	—	Unverified
6	UGCANet	mean Dice	0.95	—	Unverified
7	ESFPNet-L	mean Dice	0.95	—	Unverified
8	FCBFormer	mean Dice	0.95	—	Unverified
9	SegMed	mean Dice	0.95	—	Unverified
10	DuAT	mean Dice	0.95	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	RAPUNet	mean Dice	0.95	—	Unverified
2	DUCK-Net	mean Dice	0.94	—	Unverified
3	EMCAD	mean Dice	0.92	—	Unverified
4	SegMed	mean Dice	0.92	—	Unverified
5	UniNet	mean Dice	0.92	—	Unverified
6	ProMISe	mean Dice	0.87	—	Unverified
7	Meta-Polyp	mean Dice	0.87	—	Unverified
8	ResUNet++ + TTA	mean Dice	0.85	—	Unverified
9	PVT-GCASCADE	mean Dice	0.83	—	Unverified
10	PVT-CASCADE	mean Dice	0.83	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	RAPUNet	mean Dice	0.96	—	Unverified
2	SegMed	mean Dice	0.94	—	Unverified
3	DUCK-Net	mean Dice	0.94	—	Unverified
4	EMCAD	mean Dice	0.92	—	Unverified
5	ProMISe	mean Dice	0.84	—	Unverified
6	RSAFormer	mean Dice	0.84	—	Unverified
7	ESFPNet-L	mean Dice	0.82	—	Unverified
8	DuAT	mean Dice	0.82	—	Unverified
9	PVT-CASCADE	mean Dice	0.8	—	Unverified
10	SSFormer-L	mean Dice	0.8	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Interactive AI-SAM gt box	Avg DSC	90.66	—	Unverified
2	Medical SAM Adapter	Avg DSC	89.8	—	Unverified
3	MedSegDiff-v2	Avg DSC	89.5	—	Unverified
4	nnUNet	Avg DSC	88.8	—	Unverified
5	MedNeXt-L (5x5x5)	Avg DSC	88.76	—	Unverified
6	MIST	Avg DSC	86.92	—	Unverified
7	nnFormer	Avg DSC	86.57	—	Unverified
8	AgileFormer	Avg DSC	86.11	—	Unverified
9	MERIT	Avg DSC	84.9	—	Unverified
10	Automatic AI-SAM	Avg DSC	84.21	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	FCT	Avg DSC	94.26	—	Unverified
2	Interactive AI-SAM gt box	Avg DSC	93.89	—	Unverified
3	FCT	Avg DSC	93.02	—	Unverified
4	LHU-Net	Avg DSC	92.65	—	Unverified
5	MIST	Avg DSC	92.56	—	Unverified
6	MERIT	Avg DSC	92.32	—	Unverified
7	MERIT-GCASCADE	Avg DSC	92.23	—	Unverified
8	EMCAD	Avg DSC	92.12	—	Unverified
9	Automatic AI-SAM	Avg DSC	92.06	—	Unverified
10	nnFormer	Avg DSC	92.06	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	Stardist	F1	84.6	—	Unverified