| Interpretable Multimodal Learning for Tumor Protein-Metal Binding: Progress, Challenges, and Perspectives | Apr 4, 2025 | Drug Design | —Unverified | 0 |
| HCAF-DTA: drug-target binding affinity prediction with cross-attention fused hypergraph neural networks | Apr 2, 2025 | Drug DesignPrediction | —Unverified | 0 |
| Two for the Price of One: Integrating Large Language Models to Learn Biophysical Interactions | Mar 26, 2025 | Computational EfficiencyDrug Design | —Unverified | 0 |
| TransDiffSBDD: Causality-Aware Multi-Modal Structure-Based Drug Design | Mar 26, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| Extracting Interpretable Logic Rules from Graph Neural Networks | Mar 25, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| Linear to Neural Networks Regression: QSPR of Drugs via Degree-Distance Indices | Mar 18, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| Carbonic anhydrase II simulated with a universal neural network potential | Mar 18, 2025 | Drug Design | CodeCode Available | 0 |
| Strain Problems got you in a Twist? Try StrainRelief: A Quantum-Accurate Tool for Ligand Strain Calculations | Mar 17, 2025 | Drug DesignDrug Discovery | CodeCode Available | 1 |
| GenShin:geometry-enhanced structural graph embodies binding pose can better predicting compound-protein interaction affinity | Mar 16, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| Pretraining Generative Flow Networks with Inexpensive Rewards for Molecular Graph Generation | Mar 8, 2025 | Drug DesignGraph Generation | —Unverified | 0 |
| Integrating Protein Dynamics into Structure-Based Drug Design via Full-Atom Stochastic Flows | Mar 6, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| Pushing the boundaries of Structure-Based Drug Design through Collaboration with Large Language Models | Mar 3, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| Molecule Generation for Target Protein Binding with Hierarchical Consistency Diffusion Model | Mar 2, 2025 | Drug DesignDrug Discovery | CodeCode Available | 1 |
| Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2 | Feb 28, 2025 | Drug DesignProtein Structure Prediction | —Unverified | 0 |
| Lattice Protein Folding with Variational Annealing | Feb 28, 2025 | Combinatorial OptimizationDrug Design | —Unverified | 0 |
| Position: Graph Learning Will Lose Relevance Due To Poor Benchmarks | Feb 20, 2025 | BenchmarkingCombinatorial Optimization | —Unverified | 0 |
| Towards Efficient Molecular Property Optimization with Graph Energy Based Models | Feb 17, 2025 | Drug Design | —Unverified | 0 |
| Knowledge-aware contrastive heterogeneous molecular graph learning | Feb 17, 2025 | BenchmarkingContrastive Learning | —Unverified | 0 |
| E2CB2former: Effecitve and Explainable Transformer for CB2 Receptor Ligand Activity Prediction | Feb 15, 2025 | Activity PredictionDrug Design | —Unverified | 0 |
| Mol-MoE: Training Preference-Guided Routers for Molecule Generation | Feb 8, 2025 | BenchmarkingDrug Design | CodeCode Available | 0 |
| 3DMolFormer: A Dual-channel Framework for Structure-based Drug Discovery | Feb 7, 2025 | Drug DesignDrug Discovery | CodeCode Available | 1 |
| Accurate Pocket Identification for Binding-Site-Agnostic Docking | Feb 4, 2025 | Blind DockingDrug Design | CodeCode Available | 1 |
| Test-Time Training Scaling Laws for Chemical Exploration in Drug Design | Jan 31, 2025 | Drug DesignDrug Discovery | CodeCode Available | 3 |
| Covering Multiple Objectives with a Small Set of Solutions Using Bayesian Optimization | Jan 31, 2025 | Bayesian OptimizationDrug Design | —Unverified | 0 |
| REINFORCE-ING Chemical Language Models in Drug Design | Jan 27, 2025 | Drug Design | —Unverified | 0 |