| From Whole-slide Image to Biomarker Prediction: A Protocol for End-to-End Deep Learning in Computational Pathology | Dec 18, 2023 | Classificationwhole slide images | CodeCode Available | 1 |
| Federated Learning for Computational Pathology on Gigapixel Whole Slide Images | Sep 21, 2020 | Deep LearningDiagnostic | CodeCode Available | 1 |
| An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer | Nov 10, 2023 | whole slide images | CodeCode Available | 1 |
| CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting | Mar 11, 2023 | Nuclear SegmentationSegmentation | CodeCode Available | 1 |
| Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images | Jan 1, 2021 | AttributeMultiple Instance Learning | CodeCode Available | 1 |
| Multimodal contrastive learning for spatial gene expression prediction using histology images | Jul 11, 2024 | Contrastive Learningwhole slide images | CodeCode Available | 1 |
| Gigapixel Whole-Slide Images Classification using Locally Supervised Learning | Jul 17, 2022 | ClassificationGPU | CodeCode Available | 1 |
| MultiPathGAN: Structure Preserving Stain Normalization using Unsupervised Multi-domain Adversarial Network with Perception Loss | Apr 20, 2022 | Image Enhancementwhole slide images | CodeCode Available | 1 |
| Multiple Instance Learning with Mixed Supervision in Gleason Grading | Jun 26, 2022 | Multiple Instance Learningwhole slide images | CodeCode Available | 1 |
| Multi-Resolution Pathology-Language Pre-training Model with Text-Guided Visual Representation | Apr 26, 2025 | Survival Analysiswhole slide images | CodeCode Available | 1 |
| H&E-adversarial network: a convolutional neural network to learn stain-invariant features through Hematoxylin & Eosin regression | Jan 17, 2022 | whole slide images | CodeCode Available | 1 |
| PanNuke Dataset Extension, Insights and Baselines | Mar 24, 2020 | Selection biaswhole slide images | CodeCode Available | 1 |
| Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction | Jul 22, 2023 | Survival Predictionwhole slide images | CodeCode Available | 1 |
| PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers | Aug 19, 2023 | Multiple Instance LearningWeakly Supervised Classification | CodeCode Available | 1 |
| Histo-Genomic Knowledge Distillation For Cancer Prognosis From Histopathology Whole Slide Images | Mar 15, 2024 | BenchmarkingKnowledge Distillation | CodeCode Available | 1 |
| Contextual unsupervised deep clustering in digital pathology | Jul 24, 2024 | ClusteringDeep Clustering | CodeCode Available | 1 |
| End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma | Jul 20, 2021 | Multiple Instance Learningwhole slide images | CodeCode Available | 1 |
| Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learning | Feb 17, 2023 | ClassificationCPU | CodeCode Available | 1 |
| Quick Annotator: an open-source digital pathology based rapid image annotation tool | Jan 6, 2021 | whole slide images | CodeCode Available | 1 |
| Benchmarking Embedding Aggregation Methods in Computational Pathology: A Clinical Data Perspective | Jul 10, 2024 | BenchmarkingDiagnostic | CodeCode Available | 1 |
| EXACT: A collaboration toolset for algorithm-aided annotation of images with annotation version control | Apr 30, 2020 | ClusteringDeep Learning | CodeCode Available | 1 |
| Region-guided CycleGANs for Stain Transfer in Whole Slide Images | Aug 26, 2022 | whole slide images | CodeCode Available | 1 |
| CPIA Dataset: A Comprehensive Pathological Image Analysis Dataset for Self-supervised Learning Pre-training | Oct 27, 2023 | Self-Supervised LearningTransfer Learning | CodeCode Available | 1 |
| RLogist: Fast Observation Strategy on Whole-slide Images with Deep Reinforcement Learning | Dec 4, 2022 | BenchmarkingDecision Making | CodeCode Available | 1 |
| EasierPath: An Open-source Tool for Human-in-the-loop Deep Learning of Renal Pathology | Jul 28, 2020 | Deep Learningobject-detection | CodeCode Available | 1 |
| Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides | May 4, 2022 | Community DetectionRepresentation Learning | CodeCode Available | 1 |
| DTFD-MIL: Double-Tier Feature Distillation Multiple Instance Learning for Histopathology Whole Slide Image Classification | Mar 22, 2022 | image-classificationImage Classification | CodeCode Available | 1 |
| Edge-competing Pathological Liver Vessel Segmentation with Limited Labels | Aug 1, 2021 | Segmentationwhole slide images | CodeCode Available | 1 |
| Explainable AI for computational pathology identifies model limitations and tissue biomarkers | Sep 4, 2024 | Bias Detectioncounterfactual | CodeCode Available | 1 |
| Deep Learning-Based Quantification of Pulmonary Hemosiderophages in Cytology Slides | Aug 12, 2019 | Deep LearningDiagnostic | CodeCode Available | 1 |
| CAMIL: Context-Aware Multiple Instance Learning for Cancer Detection and Subtyping in Whole Slide Images | May 9, 2023 | DiagnosticImage Classification | CodeCode Available | 1 |
| De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy | Oct 16, 2024 | De-identificationwhole slide images | CodeCode Available | 1 |
| Deep Learning-based Computational Pathology Predicts Origins for Cancers of Unknown Primary | Jun 24, 2020 | Diagnosticwhole slide images | CodeCode Available | 1 |
| Deep Interactive Learning-based ovarian cancer segmentation of H&E-stained whole slide images to study morphological patterns of BRCA mutation | Mar 28, 2022 | Deep LearningSegmentation | CodeCode Available | 1 |
| Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification | Mar 19, 2021 | image-classificationImage Classification | CodeCode Available | 1 |
| DSCENet: Dynamic Screening and Clinical-Enhanced Multimodal Fusion for MPNs Subtype Classification | Jul 11, 2024 | Diagnosticwhole slide images | CodeCode Available | 1 |
| Dual-stream Multiple Instance Learning Network for Whole Slide Image Classification with Self-supervised Contrastive Learning | Nov 17, 2020 | ClassificationContrastive Learning | CodeCode Available | 1 |
| Deep Learning-based Frozen Section to FFPE Translation | Jul 25, 2021 | Decision MakingDeep Learning | CodeCode Available | 1 |
| Adversarial learning of cancer tissue representations | Aug 4, 2021 | Multiple Instance Learningwhole slide images | CodeCode Available | 1 |
| CellGAN: Conditional Cervical Cell Synthesis for Augmenting Cytopathological Image Classification | Jul 12, 2023 | image-classificationImage Classification | CodeCode Available | 1 |
| Detection of prostate cancer in whole-slide images through end-to-end training with image-level labels | Jun 5, 2020 | GPUMultiple Instance Learning | CodeCode Available | 1 |
| End-to-end Multiple Instance Learning with Gradient Accumulation | Mar 8, 2022 | GPUMultiple Instance Learning | CodeCode Available | 1 |
| Code-free development and deployment of deep segmentation models for digital pathology | Nov 16, 2021 | Active LearningDiagnostic | CodeCode Available | 1 |
| Fast and Scalable Image Search For Histology | Jul 28, 2021 | Image RetrievalPrognosis | CodeCode Available | 1 |
| FOCUS: Knowledge-enhanced Adaptive Visual Compression for Few-shot Whole Slide Image Classification | Nov 22, 2024 | DiagnosticFew-Shot Learning | CodeCode Available | 1 |
| CircleFormer: Circular Nuclei Detection in Whole Slide Images with Circle Queries and Attention | Aug 30, 2023 | DecoderMedical Image Analysis | CodeCode Available | 1 |
| Artifact Restoration in Histology Images with Diffusion Probabilistic Models | Jul 26, 2023 | Denoisingwhole slide images | CodeCode Available | 1 |
| Classification and mutation prediction from non–small cell lung cancer histopathology images using deep learning | Sep 17, 2018 | General ClassificationLung Cancer Diagnosis | CodeCode Available | 1 |
| Classification of Epithelial Ovarian Carcinoma Whole-Slide Pathology Images Using Deep Transfer Learning | May 22, 2020 | General ClassificationTransfer Learning | CodeCode Available | 1 |
| CryoNuSeg: A Dataset for Nuclei Instance Segmentation of Cryosectioned H&E-Stained Histological Images | Jan 2, 2021 | Instance SegmentationSegmentation | CodeCode Available | 1 |