| Evaluating Deep Regression Models for WSI-Based Gene-Expression Prediction | Oct 1, 2024 | Predictionregression | CodeCode Available | 4 |
| PRISM: A Multi-Modal Generative Foundation Model for Slide-Level Histopathology | May 16, 2024 | whole slide images | CodeCode Available | 4 |
| A deep learning framework for efficient pathology image analysis | Feb 18, 2025 | BenchmarkingDeep Learning | CodeCode Available | 4 |
| Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology | May 19, 2024 | Multiple Instance LearningRepresentation Learning | CodeCode Available | 4 |
| Molecular-driven Foundation Model for Oncologic Pathology | Jan 28, 2025 | BenchmarkingDiagnostic | CodeCode Available | 4 |
| TIAViz: A Browser-based Visualization Tool for Computational Pathology Models | Feb 15, 2024 | whole slide images | CodeCode Available | 4 |
| Rethinking Histology Slide Digitization Workflows for Low-Resource Settings | May 13, 2024 | Deblurringwhole slide images | CodeCode Available | 3 |
| HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis | Jun 23, 2024 | BenchmarkingRepresentation Learning | CodeCode Available | 3 |
| Hibou: A Family of Foundational Vision Transformers for Pathology | Jun 7, 2024 | Diagnosticwhole slide images | CodeCode Available | 2 |
| Transcriptomics-guided Slide Representation Learning in Computational Pathology | May 19, 2024 | Contrastive LearningRepresentation Learning | CodeCode Available | 2 |
| Uncertainty-Informed Deep Learning Models Enable High-Confidence Predictions for Digital Histopathology | Apr 9, 2022 | AttributeUncertainty Quantification | CodeCode Available | 2 |
| DeeperHistReg: Robust Whole Slide Images Registration Framework | Apr 19, 2024 | whole slide images | CodeCode Available | 2 |
| Dynamic Graph Representation with Knowledge-aware Attention for Histopathology Whole Slide Image Analysis | Mar 12, 2024 | Graph Representation LearningRepresentation Learning | CodeCode Available | 2 |
| HistGen: Histopathology Report Generation via Local-Global Feature Encoding and Cross-modal Context Interaction | Mar 8, 2024 | DiagnosticMedical Report Generation | CodeCode Available | 2 |
| Tissue Concepts: supervised foundation models in computational pathology | Sep 5, 2024 | DiagnosticMulti-Task Learning | CodeCode Available | 2 |
| WSI-VQA: Interpreting Whole Slide Images by Generative Visual Question Answering | Jul 8, 2024 | DiagnosticGenerative Visual Question Answering | CodeCode Available | 2 |
| Slideflow: Deep Learning for Digital Histopathology with Real-Time Whole-Slide Visualization | Apr 9, 2023 | Deep LearningHistopathological Image Classification | CodeCode Available | 2 |
| Towards Large-Scale Training of Pathology Foundation Models | Mar 24, 2024 | Nuclear SegmentationSelf-Supervised Learning | CodeCode Available | 2 |
| A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model | Jul 22, 2024 | Diagnosticwhole slide images | CodeCode Available | 2 |
| Towards A Generalizable Pathology Foundation Model via Unified Knowledge Distillation | Jul 26, 2024 | Knowledge DistillationQuestion Answering | CodeCode Available | 2 |
| Vim4Path: Self-Supervised Vision Mamba for Histopathology Images | Apr 20, 2024 | DiagnosticMamba | CodeCode Available | 2 |
| Data augmentation and multimodal learning for predicting drug response in patient-derived xenografts from gene expressions and histology images | Apr 25, 2022 | Data AugmentationDrug Response Prediction | CodeCode Available | 2 |
| Multimodal Prototyping for cancer survival prediction | Jun 28, 2024 | PredictionSurvival Prediction | CodeCode Available | 2 |
| MambaMIL: Enhancing Long Sequence Modeling with Sequence Reordering in Computational Pathology | Mar 11, 2024 | MambaMultiple Instance Learning | CodeCode Available | 2 |
| Prototypical Information Bottlenecking and Disentangling for Multimodal Cancer Survival Prediction | Jan 3, 2024 | DisentanglementSurvival Prediction | CodeCode Available | 2 |
| Interpretable Vision-Language Survival Analysis with Ordinal Inductive Bias for Computational Pathology | Sep 14, 2024 | Inductive BiasPrognosis | CodeCode Available | 2 |
| Multistain Pretraining for Slide Representation Learning in Pathology | Aug 5, 2024 | Representation LearningSelf-Supervised Learning | CodeCode Available | 2 |
| AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image Classification | Jun 18, 2024 | Diversityimage-classification | CodeCode Available | 2 |
| MedIAnomaly: A comparative study of anomaly detection in medical images | Apr 6, 2024 | Anomaly ClassificationAnomaly Detection | CodeCode Available | 2 |
| Low-resource finetuning of foundation models beats state-of-the-art in histopathology | Jan 9, 2024 | GPUSelf-Supervised Learning | CodeCode Available | 2 |
| Queryable Prototype Multiple Instance Learning with Vision-Language Models for Incremental Whole Slide Image Classification | Oct 14, 2024 | Classificationimage-classification | CodeCode Available | 2 |
| Edge-competing Pathological Liver Vessel Segmentation with Limited Labels | Aug 1, 2021 | Segmentationwhole slide images | CodeCode Available | 1 |
| EasierPath: An Open-source Tool for Human-in-the-loop Deep Learning of Renal Pathology | Jul 28, 2020 | Deep Learningobject-detection | CodeCode Available | 1 |
| Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learning | Feb 17, 2023 | ClassificationCPU | CodeCode Available | 1 |
| Dual-stream Multiple Instance Learning Network for Whole Slide Image Classification with Self-supervised Contrastive Learning | Nov 17, 2020 | ClassificationContrastive Learning | CodeCode Available | 1 |
| End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma | Jul 20, 2021 | Multiple Instance Learningwhole slide images | CodeCode Available | 1 |
| DGMIL: Distribution Guided Multiple Instance Learning for Whole Slide Image Classification | Jun 17, 2022 | Classificationimage-classification | CodeCode Available | 1 |
| Detection of prostate cancer in whole-slide images through end-to-end training with image-level labels | Jun 5, 2020 | GPUMultiple Instance Learning | CodeCode Available | 1 |
| DSCENet: Dynamic Screening and Clinical-Enhanced Multimodal Fusion for MPNs Subtype Classification | Jul 11, 2024 | Diagnosticwhole slide images | CodeCode Available | 1 |
| Deep Learning-Based Quantification of Pulmonary Hemosiderophages in Cytology Slides | Aug 12, 2019 | Deep LearningDiagnostic | CodeCode Available | 1 |
| Deep Learning-based Computational Pathology Predicts Origins for Cancers of Unknown Primary | Jun 24, 2020 | Diagnosticwhole slide images | CodeCode Available | 1 |
| De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy | Oct 16, 2024 | De-identificationwhole slide images | CodeCode Available | 1 |
| DTFD-MIL: Double-Tier Feature Distillation Multiple Instance Learning for Histopathology Whole Slide Image Classification | Mar 22, 2022 | image-classificationImage Classification | CodeCode Available | 1 |
| End-to-end Multiple Instance Learning with Gradient Accumulation | Mar 8, 2022 | GPUMultiple Instance Learning | CodeCode Available | 1 |
| EXAONEPath 1.0 Patch-level Foundation Model for Pathology | Aug 1, 2024 | modelSelf-Supervised Learning | CodeCode Available | 1 |
| Aligning Knowledge Concepts to Whole Slide Images for Precise Histopathology Image Analysis | Nov 27, 2024 | Language ModelingLanguage Modelling | CodeCode Available | 1 |
| An Accelerated Pipeline for Multi-label Renal Pathology Image Segmentation at the Whole Slide Image Level | May 23, 2023 | GPUImage Segmentation | CodeCode Available | 1 |
| A New Graph Node Classification Benchmark: Learning Structure from Histology Cell Graphs | Nov 11, 2022 | Graph LearningGraph Neural Network | CodeCode Available | 1 |
| Deep Learning-based Frozen Section to FFPE Translation | Jul 25, 2021 | Decision MakingDeep Learning | CodeCode Available | 1 |
| CryoNuSeg: A Dataset for Nuclei Instance Segmentation of Cryosectioned H&E-Stained Histological Images | Jan 2, 2021 | Instance SegmentationSegmentation | CodeCode Available | 1 |