| A deep learning framework for efficient pathology image analysis | Feb 18, 2025 | BenchmarkingDeep Learning | CodeCode Available | 4 |
| Molecular-driven Foundation Model for Oncologic Pathology | Jan 28, 2025 | BenchmarkingDiagnostic | CodeCode Available | 4 |
| Evaluating Deep Regression Models for WSI-Based Gene-Expression Prediction | Oct 1, 2024 | Predictionregression | CodeCode Available | 4 |
| Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology | May 19, 2024 | Multiple Instance LearningRepresentation Learning | CodeCode Available | 4 |
| PRISM: A Multi-Modal Generative Foundation Model for Slide-Level Histopathology | May 16, 2024 | whole slide images | CodeCode Available | 4 |
| TIAViz: A Browser-based Visualization Tool for Computational Pathology Models | Feb 15, 2024 | whole slide images | CodeCode Available | 4 |
| HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis | Jun 23, 2024 | BenchmarkingRepresentation Learning | CodeCode Available | 3 |
| Rethinking Histology Slide Digitization Workflows for Low-Resource Settings | May 13, 2024 | Deblurringwhole slide images | CodeCode Available | 3 |
| Queryable Prototype Multiple Instance Learning with Vision-Language Models for Incremental Whole Slide Image Classification | Oct 14, 2024 | Classificationimage-classification | CodeCode Available | 2 |
| Interpretable Vision-Language Survival Analysis with Ordinal Inductive Bias for Computational Pathology | Sep 14, 2024 | Inductive BiasPrognosis | CodeCode Available | 2 |
| Tissue Concepts: supervised foundation models in computational pathology | Sep 5, 2024 | DiagnosticMulti-Task Learning | CodeCode Available | 2 |
| Multistain Pretraining for Slide Representation Learning in Pathology | Aug 5, 2024 | Representation LearningSelf-Supervised Learning | CodeCode Available | 2 |
| Towards A Generalizable Pathology Foundation Model via Unified Knowledge Distillation | Jul 26, 2024 | Knowledge DistillationQuestion Answering | CodeCode Available | 2 |
| A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model | Jul 22, 2024 | Diagnosticwhole slide images | CodeCode Available | 2 |
| WSI-VQA: Interpreting Whole Slide Images by Generative Visual Question Answering | Jul 8, 2024 | DiagnosticGenerative Visual Question Answering | CodeCode Available | 2 |
| Multimodal Prototyping for cancer survival prediction | Jun 28, 2024 | PredictionSurvival Prediction | CodeCode Available | 2 |
| AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image Classification | Jun 18, 2024 | Diversityimage-classification | CodeCode Available | 2 |
| Hibou: A Family of Foundational Vision Transformers for Pathology | Jun 7, 2024 | Diagnosticwhole slide images | CodeCode Available | 2 |
| Transcriptomics-guided Slide Representation Learning in Computational Pathology | May 19, 2024 | Contrastive LearningRepresentation Learning | CodeCode Available | 2 |
| Vim4Path: Self-Supervised Vision Mamba for Histopathology Images | Apr 20, 2024 | DiagnosticMamba | CodeCode Available | 2 |
| DeeperHistReg: Robust Whole Slide Images Registration Framework | Apr 19, 2024 | whole slide images | CodeCode Available | 2 |
| MedIAnomaly: A comparative study of anomaly detection in medical images | Apr 6, 2024 | Anomaly ClassificationAnomaly Detection | CodeCode Available | 2 |
| Towards Large-Scale Training of Pathology Foundation Models | Mar 24, 2024 | Nuclear SegmentationSelf-Supervised Learning | CodeCode Available | 2 |
| Dynamic Graph Representation with Knowledge-aware Attention for Histopathology Whole Slide Image Analysis | Mar 12, 2024 | Graph Representation LearningRepresentation Learning | CodeCode Available | 2 |
| MambaMIL: Enhancing Long Sequence Modeling with Sequence Reordering in Computational Pathology | Mar 11, 2024 | MambaMultiple Instance Learning | CodeCode Available | 2 |
| HistGen: Histopathology Report Generation via Local-Global Feature Encoding and Cross-modal Context Interaction | Mar 8, 2024 | DiagnosticMedical Report Generation | CodeCode Available | 2 |
| Low-resource finetuning of foundation models beats state-of-the-art in histopathology | Jan 9, 2024 | GPUSelf-Supervised Learning | CodeCode Available | 2 |
| Prototypical Information Bottlenecking and Disentangling for Multimodal Cancer Survival Prediction | Jan 3, 2024 | DisentanglementSurvival Prediction | CodeCode Available | 2 |
| Slideflow: Deep Learning for Digital Histopathology with Real-Time Whole-Slide Visualization | Apr 9, 2023 | Deep LearningHistopathological Image Classification | CodeCode Available | 2 |
| Data augmentation and multimodal learning for predicting drug response in patient-derived xenografts from gene expressions and histology images | Apr 25, 2022 | Data AugmentationDrug Response Prediction | CodeCode Available | 2 |
| Uncertainty-Informed Deep Learning Models Enable High-Confidence Predictions for Digital Histopathology | Apr 9, 2022 | AttributeUncertainty Quantification | CodeCode Available | 2 |
| OTSurv: A Novel Multiple Instance Learning Framework for Survival Prediction with Heterogeneity-aware Optimal Transport | Jun 25, 2025 | Multiple Instance LearningSurvival Prediction | CodeCode Available | 1 |
| Histo-Miner: Deep Learning based Tissue Features Extraction Pipeline from H&E Whole Slide Images of Cutaneous Squamous Cell Carcinoma | May 7, 2025 | Segmentationwhole slide images | CodeCode Available | 1 |
| Multi-Resolution Pathology-Language Pre-training Model with Text-Guided Visual Representation | Apr 26, 2025 | Survival Analysiswhole slide images | CodeCode Available | 1 |
| Towards Accurate and Interpretable Neuroblastoma Diagnosis via Contrastive Multi-scale Pathological Image Analysis | Apr 18, 2025 | Contrastive LearningDiagnostic | CodeCode Available | 1 |
| A Survey of Pathology Foundation Model: Progress and Future Directions | Apr 5, 2025 | BenchmarkingMultiple Instance Learning | CodeCode Available | 1 |
| Robust Multimodal Survival Prediction with the Latent Differentiation Conditional Variational AutoEncoder | Mar 12, 2025 | Survival Predictionwhole slide images | CodeCode Available | 1 |
| UnPuzzle: A Unified Framework for Pathology Image Analysis | Mar 5, 2025 | BenchmarkingDiagnostic | CodeCode Available | 1 |
| Fast and Accurate Gigapixel Pathological Image Classification with Hierarchical Distillation Multi-Instance Learning | Feb 28, 2025 | image-classificationImage Classification | CodeCode Available | 1 |
| Joint Modelling Histology and Molecular Markers for Cancer Classification | Feb 11, 2025 | Cancer ClassificationPrognosis | CodeCode Available | 1 |
| SurGen: 1020 H&E-stained Whole Slide Images With Survival and Genetic Markers | Feb 7, 2025 | Diagnosticwhole slide images | CodeCode Available | 1 |
| Mind the Gap: Evaluating Patch Embeddings from General-Purpose and Histopathology Foundation Models for Cell Segmentation and Classification | Feb 4, 2025 | Cell SegmentationDecoder | CodeCode Available | 1 |
| ICFNet: Integrated Cross-modal Fusion Network for Survival Prediction | Jan 6, 2025 | Decision MakingSurvival Prediction | CodeCode Available | 1 |
| A Knowledge-enhanced Pathology Vision-language Foundation Model for Cancer Diagnosis | Dec 17, 2024 | DiagnosticSpecificity | CodeCode Available | 1 |
| Towards Unified Molecule-Enhanced Pathology Image Representation Learning via Integrating Spatial Transcriptomics | Dec 1, 2024 | Data IntegrationRepresentation Learning | CodeCode Available | 1 |
| Aligning Knowledge Concepts to Whole Slide Images for Precise Histopathology Image Analysis | Nov 27, 2024 | Language ModelingLanguage Modelling | CodeCode Available | 1 |
| FOCUS: Knowledge-enhanced Adaptive Visual Compression for Few-shot Whole Slide Image Classification | Nov 22, 2024 | DiagnosticFew-Shot Learning | CodeCode Available | 1 |
| Unsupervised Foundation Model-Agnostic Slide-Level Representation Learning | Nov 20, 2024 | Mambamodel | CodeCode Available | 1 |
| HMIL: Hierarchical Multi-Instance Learning for Fine-Grained Whole Slide Image Classification | Nov 12, 2024 | ClassificationContrastive Learning | CodeCode Available | 1 |
| De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy | Oct 16, 2024 | De-identificationwhole slide images | CodeCode Available | 1 |