SOTAVerified

Protein Structure Prediction

Image credit: FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours

Papers

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Showing 151–175 of 188 papers

TitleStatusHype
CENTS: Generating synthetic electricity consumption time series for rare and unseen scenarios—0
Cognitio Emergens: Agency, Dimensions, and Dynamics in Human-AI Knowledge Co-Creation—0
Computational Protein Science in the Era of Large Language Models (LLMs)—0
Conditional Neural Fields—0
Convergence of Continuous Normalizing Flows for Learning Probability Distributions—0
cryoSPHERE: Single-particle heterogeneous reconstruction from cryo EM—0
CrysAtom: Distributed Representation of Atoms for Crystal Property Prediction—0
CrysFormer: Protein Structure Prediction via 3d Patterson Maps and Partial Structure Attention—0
Data Resources for Structural Bioinformatics—0
Decoy Selection for Protein Structure Prediction Via Extreme Gradient Boosting and Ranking—0
DeepFoldit -- A Deep Reinforcement Learning Neural Network Folding Proteins—0
Deep Learning applications for COVID-19—0
Deep Learning for Computational Chemistry—0
Deep Learning in Computational Biology: Advancements, Challenges, and Future Outlook—0
DeepQA: Improving the estimation of single protein model quality with deep belief networks—0
Deep Reinforcement Learning for Modelling Protein Complexes—0
Deep Spatio-Temporal Architectures and Learning for Protein Structure Prediction—0
Dihedral Angle Adherence: Evaluating Protein Structure Predictions in the Absence of Experimental Data—0
Dihedral angle prediction using generative adversarial networks—0
Direct Generation of Protein Conformational Ensembles via Machine Learning—0
Direct Preference-Based Evolutionary Multi-Objective Optimization with Dueling Bandit—0
E3Bind: An End-to-End Equivariant Network for Protein-Ligand Docking—0
EBM-Fold: Fully-Differentiable Protein Folding Powered by Energy-based Models—0
Evaluation of Protein Structural Models Using Random Forests—0
Exploring zero-shot structure-based protein fitness prediction—0
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All datasetsCASPSeqCASPSimSeqPaenSeqUniProtSeq

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity20.62—Unverified
2GAL 1.3BValidation perplexity17.58—Unverified
3GAL 6.7BValidation perplexity17.29—Unverified
4GAL 30BValidation perplexity17.27—Unverified
5GAL 120BValidation perplexity17.26—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity19.18—Unverified
2GAL 1.3BValidation perplexity17.04—Unverified
3GAL 6.7BValidation perplexity16.35—Unverified
4GAL 30BValidation perplexity15.42—Unverified
5GAL 120BValidation perplexity12.77—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity16.35—Unverified
2GAL 1.3BValidation perplexity12.53—Unverified
3GAL 6.7BValidation perplexity7.76—Unverified
4GAL 30BValidation perplexity4.28—Unverified
5GAL 120BValidation perplexity3.14—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity19.05—Unverified
2GAL 1.3BValidation perplexity15.82—Unverified
3GAL 6.7BValidation perplexity11.58—Unverified
4GAL 30BValidation perplexity8.23—Unverified
5GAL 120BValidation perplexity5.54—Unverified