| Recent advances in interpretable machine learning using structure-based protein representations | Sep 26, 2024 | Interpretable Machine LearningProtein Design | —Unverified | 0 | 0 |
| Reimagining Target-Aware Molecular Generation through Retrieval-Enhanced Aligned Diffusion | Jun 17, 2025 | Drug DesignDrug Discovery | —Unverified | 0 | 0 |
| Seq-SetNet: Exploring Sequence Sets for Inferring Structures | Jun 6, 2019 | Multiple Sequence AlignmentProtein Secondary Structure Prediction | —Unverified | 0 | 0 |
| SGNet: Folding Symmetrical Protein Complex with Deep Learning | Mar 7, 2024 | Deep LearningProtein Folding | —Unverified | 0 | 0 |
| Simultaneous identification of specifically interacting paralogs and inter-protein contacts by Direct-Coupling Analysis | May 12, 2016 | Protein Structure Prediction | —Unverified | 0 | 0 |
| Sparse, guided feature connections in an Abstract Deep Network | Dec 16, 2014 | Evolutionary Algorithmsimage-classification | —Unverified | 0 | 0 |
| Structural Property Prediction | Jul 5, 2023 | BenchmarkingPrediction | —Unverified | 0 | 0 |
| Structure Alignment | Jul 5, 2023 | Protein Structure Prediction | —Unverified | 0 | 0 |
| Structure determination | Aug 5, 2021 | Cryogenic Electron Microscopy (cryo-EM)Protein Structure Prediction | —Unverified | 0 | 0 |
| Technical Report of HelixFold3 for Biomolecular Structure Prediction | Aug 30, 2024 | PredictionProtein Structure Prediction | —Unverified | 0 | 0 |
| tFold-TR: Combining Deep Learning Enhanced Hybrid Potential Energy for Template-Based Modeling Structure Refinement | May 10, 2021 | Drug DesignProtein Structure Prediction | —Unverified | 0 | 0 |
| The curious case of A31P, a topology-switching mutant of the Repressor of Primer protein : A molecular dynamics study of its folding and misfolding | Apr 1, 2024 | Protein Structure Prediction | —Unverified | 0 | 0 |
| The prospects of quantum computing in computational molecular biology | May 26, 2020 | Drug DiscoveryProtein Structure Prediction | —Unverified | 0 | 0 |
| Thermodynamics of Protein Folding | Jul 5, 2023 | Protein FoldingProtein Structure Prediction | —Unverified | 0 | 0 |
| TOPO: Improving remote homologue recognition via identifying common protein structure framework | Jul 12, 2015 | PredictionProtein Structure Prediction | —Unverified | 0 | 0 |
| Transformers in Protein: A Survey | May 26, 2025 | BenchmarkingDrug Discovery | —Unverified | 0 | 0 |
| Understanding Biology in the Age of Artificial Intelligence | Mar 6, 2024 | Protein Structure Prediction | —Unverified | 0 | 0 |
| Unfolding AlphaFold's Bayesian Roots in Probability Kinematics | May 26, 2025 | Probabilistic Deep LearningProtein Structure Prediction | —Unverified | 0 | 0 |
| Variational Inference for Sparse and Undirected Models | Feb 11, 2016 | Bayesian InferenceProtein Structure Prediction | —Unverified | 0 | 0 |
| "Weak AI" is Likely to Never Become "Strong AI", So What is its Greatest Value for us? | Mar 29, 2021 | image-classificationImage Classification | —Unverified | 0 | 0 |
| Multiscale guidance of AlphaFold3 with heterogeneous cryo-EM data | Jun 4, 2025 | DiversityPrediction | —Unverified | 0 | 0 |
| What is an equivariant neural network? | May 15, 2022 | Protein Structure Prediction | —Unverified | 0 | 0 |
| 3D RNA and functional interactions from evolutionary couplings | Apr 21, 2016 | PredictionProtein Structure Prediction | —Unverified | 0 | 0 |
| AlphaFolding: 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance | Aug 22, 2024 | Experimental DesignProtein Structure Prediction | —Unverified | 0 | 0 |
| 6DCNN with roto-translational convolution filters for volumetric data processing | Jul 26, 2021 | Protein Structure Prediction | —Unverified | 0 | 0 |
