| SidechainNet: An All-Atom Protein Structure Dataset for Machine Learning | Oct 16, 2020 | AllBIG-bench Machine Learning | CodeCode Available | 1 |
| Energy-based models for atomic-resolution protein conformations | Apr 27, 2020 | Protein DesignProtein Structure Prediction | CodeCode Available | 1 |
| PolyFold: an interactive visual simulator for distance-based protein folding | Feb 14, 2020 | Protein FoldingProtein Structure Prediction | CodeCode Available | 1 |
| Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations | Nov 9, 2019 | Deep LearningDrug Design | CodeCode Available | 1 |
| ProteinNet: a standardized data set for machine learning of protein structure | Feb 1, 2019 | BIG-bench Machine LearningProtein Secondary Structure Prediction | CodeCode Available | 1 |
| Reimagining Target-Aware Molecular Generation through Retrieval-Enhanced Aligned Diffusion | Jun 17, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| Multiscale guidance of AlphaFold3 with heterogeneous cryo-EM data | Jun 4, 2025 | DiversityPrediction | —Unverified | 0 |
| Aligning Protein Conformation Ensemble Generation with Physical Feedback | May 30, 2025 | DenoisingDrug Discovery | —Unverified | 0 |
| Transformers in Protein: A Survey | May 26, 2025 | BenchmarkingDrug Discovery | —Unverified | 0 |
| Unfolding AlphaFold's Bayesian Roots in Probability Kinematics | May 26, 2025 | Probabilistic Deep LearningProtein Structure Prediction | —Unverified | 0 |
