| Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations | Nov 9, 2019 | Deep LearningDrug Design | CodeCode Available | 1 |
| Universal Transforming Geometric Network | Aug 2, 2019 | Protein Structure Prediction | CodeCode Available | 0 |
| A new hybrid genetic algorithm for protein structure prediction on the 2D triangular lattice | Jul 8, 2019 | Combinatorial OptimizationProtein Structure Prediction | —Unverified | 0 |
| Seq-SetNet: Exploring Sequence Sets for Inferring Structures | Jun 6, 2019 | Multiple Sequence AlignmentProtein Secondary Structure Prediction | —Unverified | 0 |
| AmoebaContact and GDFold: a new pipeline for rapid prediction of protein structures | May 28, 2019 | PredictionProtein Structure Prediction | —Unverified | 0 |
| ProteinNet: a standardized data set for machine learning of protein structure | Feb 1, 2019 | BIG-bench Machine LearningProtein Secondary Structure Prediction | CodeCode Available | 1 |
| FoldingZero: Protein Folding from Scratch in Hydrophobic-Polar Model | Dec 3, 2018 | Deep Reinforcement LearningProtein Folding | —Unverified | 0 |
| Dihedral angle prediction using generative adversarial networks | Mar 29, 2018 | Density EstimationGenerative Adversarial Network | —Unverified | 0 |
| Preface to Introduction to Protein Structural Bioinformatics | Jan 29, 2018 | Protein Structure Prediction | —Unverified | 0 |
| How pairwise coevolutionary models capture the collective residue variability in proteins | Jan 12, 2018 | Protein Structure Prediction | CodeCode Available | 0 |
| Real-value and confidence prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning | Dec 19, 2017 | ClusteringPrediction | —Unverified | 0 |
| Finding optimal finite biological sequences over finite alphabets: the OptiFin toolbox | Jun 25, 2017 | Protein Structure Prediction | —Unverified | 0 |
| Deep Learning for Computational Chemistry | Jan 17, 2017 | BIG-bench Machine LearningComputational chemistry | —Unverified | 0 |
| Protein Secondary Structure Prediction Using Deep Multi-scale Convolutional Neural Networks and Next-Step Conditioning | Nov 4, 2016 | Protein Secondary Structure PredictionProtein Structure Prediction | —Unverified | 0 |
| DeepQA: Improving the estimation of single protein model quality with deep belief networks | Jul 15, 2016 | Protein Structure Prediction | —Unverified | 0 |
| Folding and Stabilization of Native-Sequence-Reversed Proteins | Jun 16, 2016 | Protein DesignProtein Folding | —Unverified | 0 |
| Simultaneous identification of specifically interacting paralogs and inter-protein contacts by Direct-Coupling Analysis | May 12, 2016 | Protein Structure Prediction | —Unverified | 0 |
| MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-based Protein Structure Prediction | May 10, 2016 | General Classificationimage-classification | CodeCode Available | 0 |
| 3D RNA and functional interactions from evolutionary couplings | Apr 21, 2016 | PredictionProtein Structure Prediction | —Unverified | 0 |
| Protein single-model quality assessment by feature-based probability density functions | Mar 22, 2016 | PredictionProtein Structure Prediction | —Unverified | 0 |
| Guided macro-mutation in a graded energy based genetic algorithm for protein structure prediction | Mar 7, 2016 | Protein Structure Prediction | —Unverified | 0 |
| Evaluation of Protein Structural Models Using Random Forests | Feb 13, 2016 | Protein Structure Prediction | —Unverified | 0 |
| Variational Inference for Sparse and Undirected Models | Feb 11, 2016 | Bayesian InferenceProtein Structure Prediction | —Unverified | 0 |
| Liquid-theory analogy of direct-coupling analysis of multiple-sequence alignment and its implications for protein structure prediction | Nov 10, 2015 | Multiple Sequence AlignmentPrediction | —Unverified | 0 |
| Protein Structure Prediction by Protein Alignments | Oct 19, 2015 | PredictionProtein Structure Prediction | —Unverified | 0 |
| Improving protein threading accuracy via combining local and global potential using TreeCRF model | Sep 11, 2015 | PredictionProtein Structure Prediction | —Unverified | 0 |
| TOPO: Improving remote homologue recognition via identifying common protein structure framework | Jul 12, 2015 | PredictionProtein Structure Prediction | —Unverified | 0 |
| Sparse, guided feature connections in an Abstract Deep Network | Dec 16, 2014 | Evolutionary Algorithmsimage-classification | —Unverified | 0 |
| GreMuTRRR: A Novel Genetic Algorithm to Solve Distance Geometry Problem for Protein Structures | Nov 16, 2014 | Protein Structure Prediction | —Unverified | 0 |
| AIS-INMACA: A Novel Integrated MACA Based Clonal Classifier for Protein Coding and Promoter Region Prediction | Mar 24, 2014 | Protein Structure Prediction | —Unverified | 0 |
| Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction | Mar 6, 2014 | PredictionProtein Secondary Structure Prediction | CodeCode Available | 0 |
| HMACA: Towards Proposing a Cellular Automata Based Tool for Protein Coding, Promoter Region Identification and Protein Structure Prediction | Jan 21, 2014 | Protein Structure Prediction | —Unverified | 0 |
| PSMACA: An Automated Protein Structure Prediction Using MACA (Multiple Attractor Cellular Automata) | Jan 13, 2014 | feature selectionProtein Structure Prediction | —Unverified | 0 |
| Mixing Energy Models in Genetic Algorithms for On-Lattice Protein Structure Prediction | Nov 15, 2013 | Protein Structure Prediction | —Unverified | 0 |
| A Hybrid Local Search for Simplified Protein Structure Prediction | Oct 31, 2013 | Protein Structure Prediction | —Unverified | 0 |
| A Hybrid Monte Carlo Ant Colony Optimization Approach for Protein Structure Prediction in the HP Model | Sep 30, 2013 | Protein Structure Prediction | —Unverified | 0 |
| Deep Spatio-Temporal Architectures and Learning for Protein Structure Prediction | Dec 1, 2012 | BIG-bench Machine LearningPrediction | —Unverified | 0 |
| Conditional Neural Fields | Dec 1, 2009 | Handwriting RecognitionHyperparameter Optimization | —Unverified | 0 |
