SOTAVerified

Protein Structure Prediction

Image credit: FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours

Papers

Recently AddedMost HypedMost ActiveNeeds VerificationMost Verified

Showing 76–100 of 188 papers

TitleStatusHype
Leveraging Deep Generative Model For Computational Protein Design And Optimization—0
Technical Report of HelixFold3 for Biomolecular Structure Prediction—0
MultiMed: Massively Multimodal and Multitask Medical Understanding—0
AlphaFolding: 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance—0
Dihedral Angle Adherence: Evaluating Protein Structure Predictions in the Absence of Experimental Data—0
Benchmarking AlphaFold3's protein-protein complex accuracy and machine learning prediction reliability for binding free energy changes upon mutation—0
cryoSPHERE: Single-particle heterogeneous reconstruction from cryo EM—0
HelixFold-Multimer: Elevating Protein Complex Structure Prediction to New Heights—0
AlphaCrystal-II: Distance matrix based crystal structure prediction using deep learning—0
The curious case of A31P, a topology-switching mutant of the Repressor of Primer protein : A molecular dynamics study of its folding and misfolding—0
Convergence of Continuous Normalizing Flows for Learning Probability Distributions—0
AlphaFold2 for protein structure prediction: Best practices and critical analyses—0
Deep Reinforcement Learning for Modelling Protein Complexes—0
Advances of Deep Learning in Protein Science: A Comprehensive Survey—0
SGNet: Folding Symmetrical Protein Complex with Deep Learning—0
Understanding Biology in the Age of Artificial Intelligence—0
A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration—0
Linker-Tuning: Optimizing Continuous Prompts for Heterodimeric Protein Prediction—0
FoldExplorer: Fast and Accurate Protein Structure Search with Sequence-Enhanced Graph Embedding—0
PDB-Struct: A Comprehensive Benchmark for Structure-based Protein DesignCode0
AI in Pharma for Personalized Sequential Decision-Making: Methods, Applications and Opportunities—0
Direct Preference-Based Evolutionary Multi-Objective Optimization with Dueling Bandit—0
Exploring Post-Training Quantization of Protein Language ModelsCode0
CrysFormer: Protein Structure Prediction via 3d Patterson Maps and Partial Structure Attention—0
Deep Learning in Computational Biology: Advancements, Challenges, and Future Outlook—0
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All datasetsCASPSeqCASPSimSeqPaenSeqUniProtSeq

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity20.62—Unverified
2GAL 1.3BValidation perplexity17.58—Unverified
3GAL 6.7BValidation perplexity17.29—Unverified
4GAL 30BValidation perplexity17.27—Unverified
5GAL 120BValidation perplexity17.26—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity19.18—Unverified
2GAL 1.3BValidation perplexity17.04—Unverified
3GAL 6.7BValidation perplexity16.35—Unverified
4GAL 30BValidation perplexity15.42—Unverified
5GAL 120BValidation perplexity12.77—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity16.35—Unverified
2GAL 1.3BValidation perplexity12.53—Unverified
3GAL 6.7BValidation perplexity7.76—Unverified
4GAL 30BValidation perplexity4.28—Unverified
5GAL 120BValidation perplexity3.14—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity19.05—Unverified
2GAL 1.3BValidation perplexity15.82—Unverified
3GAL 6.7BValidation perplexity11.58—Unverified
4GAL 30BValidation perplexity8.23—Unverified
5GAL 120BValidation perplexity5.54—Unverified