| RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design | Jan 25, 2023 | Contrastive LearningProtein Design | CodeCode Available | 1 |
| FoldMark: Protecting Protein Generative Models with Watermarking | Oct 27, 2024 | Drug DiscoveryProtein Structure Prediction | CodeCode Available | 1 |
| Energy-based models for atomic-resolution protein conformations | Apr 27, 2020 | Protein DesignProtein Structure Prediction | CodeCode Available | 1 |
| EigenFold: Generative Protein Structure Prediction with Diffusion Models | Apr 5, 2023 | PredictionProtein Structure Prediction | CodeCode Available | 1 |
| Enhancing the Protein Tertiary Structure Prediction by Multiple Sequence Alignment Generation | Jun 2, 2023 | Language ModelingLanguage Modelling | CodeCode Available | 1 |
| DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing | Jun 1, 2023 | DenoisingProtein Structure Prediction | CodeCode Available | 1 |
| ExplainableFold: Understanding AlphaFold Prediction with Explainable AI | Jan 27, 2023 | counterfactualPrediction | CodeCode Available | 1 |
| DeepProtein: Deep Learning Library and Benchmark for Protein Sequence Learning | Oct 2, 2024 | Deep LearningDrug Discovery | CodeCode Available | 1 |
| CREMP: Conformer-rotamer ensembles of macrocyclic peptides for machine learning | May 14, 2023 | Protein Structure Prediction | CodeCode Available | 1 |
| AtomSurf : Surface Representation for Learning on Protein Structures | Sep 28, 2023 | Atom3D benchmarkProtein Structure Prediction | CodeCode Available | 1 |
