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Protein Structure Prediction

Image credit: FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours

Papers

Recently AddedMost HypedMost ActiveNeeds VerificationMost Verified

Showing 51–100 of 188 papers

TitleStatusHype
E3Bind: An End-to-End Equivariant Network for Protein-Ligand Docking—0
EBM-Fold: Fully-Differentiable Protein Folding Powered by Energy-based Models—0
Evaluation of Protein Structural Models Using Random Forests—0
Exploring zero-shot structure-based protein fitness prediction—0
FFF: Fragment-Guided Flexible Fitting for Building Complete Protein Structures—0
FFF: Fragments-Guided Flexible Fitting for Building Complete Protein Structures—0
Finding optimal finite biological sequences over finite alphabets: the OptiFin toolbox—0
FoldExplorer: Fast and Accurate Protein Structure Search with Sequence-Enhanced Graph Embedding—0
Folding and Stabilization of Native-Sequence-Reversed Proteins—0
FoldingZero: Protein Folding from Scratch in Hydrophobic-Polar Model—0
From sequence to protein structure and conformational dynamics with AI/ML—0
Functional Protein Structure Annotation Using a Deep Convolutional Generative Adversarial Network—0
Function Prediction—0
GreMuTRRR: A Novel Genetic Algorithm to Solve Distance Geometry Problem for Protein Structures—0
Guided macro-mutation in a graded energy based genetic algorithm for protein structure prediction—0
HelixFold-Multimer: Elevating Protein Complex Structure Prediction to New Heights—0
HMACA: Towards Proposing a Cellular Automata Based Tool for Protein Coding, Promoter Region Identification and Protein Structure Prediction—0
Improving protein threading accuracy via combining local and global potential using TreeCRF model—0
Internal-Coordinate Density Modelling of Protein Structure: Covariance Matters—0
Introduction to Protein Folding—0
Introduction to Protein Structure—0
Leveraging Deep Generative Model For Computational Protein Design And Optimization—0
Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2—0
LightNobel: Improving Sequence Length Limitation in Protein Structure Prediction Model via Adaptive Activation Quantization—0
Linker-Tuning: Optimizing Continuous Prompts for Heterodimeric Protein Prediction—0
Liquid-theory analogy of direct-coupling analysis of multiple-sequence alignment and its implications for protein structure prediction—0
Mass spectrometry for semi-experimental protein structure determination and modeling—0
Mixing Energy Models in Genetic Algorithms for On-Lattice Protein Structure Prediction—0
Molecular Dynamics—0
Monte Carlo for Protein Structures—0
MultiMed: Massively Multimodal and Multitask Medical Understanding—0
NMRPy: a novel NMR scripting system to implement artificial intelligence and advanced applications—0
Non-Canonical Crosslinks Confound Evolutionary Protein Structure Models—0
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches—0
On How AI Needs to Change to Advance the Science of Drug Discovery—0
On the performance of deep learning for numerical optimization: an application to protein structure prediction—0
What is an equivariant neural network?—0
3D RNA and functional interactions from evolutionary couplings—0
AlphaFolding: 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance—0
6DCNN with roto-translational convolution filters for volumetric data processing—0
A Comprehensive Review of Generative AI in Healthcare—0
Advanced Deep Learning Methods for Protein Structure Prediction and Design—0
Advances of Deep Learning in Protein Science: A Comprehensive Survey—0
A Hybrid Local Search for Simplified Protein Structure Prediction—0
A Hybrid Monte Carlo Ant Colony Optimization Approach for Protein Structure Prediction in the HP Model—0
AI-guided Antibiotic Discovery Pipeline from Target Selection to Compound Identification—0
AI in Pharma for Personalized Sequential Decision-Making: Methods, Applications and Opportunities—0
AIS-INMACA: A Novel Integrated MACA Based Clonal Classifier for Protein Coding and Promoter Region Prediction—0
Aligning Protein Conformation Ensemble Generation with Physical Feedback—0
AlphaCrystal-II: Distance matrix based crystal structure prediction using deep learning—0
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All datasetsCASPSeqCASPSimSeqPaenSeqUniProtSeq

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity20.62—Unverified
2GAL 1.3BValidation perplexity17.58—Unverified
3GAL 6.7BValidation perplexity17.29—Unverified
4GAL 30BValidation perplexity17.27—Unverified
5GAL 120BValidation perplexity17.26—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity19.18—Unverified
2GAL 1.3BValidation perplexity17.04—Unverified
3GAL 6.7BValidation perplexity16.35—Unverified
4GAL 30BValidation perplexity15.42—Unverified
5GAL 120BValidation perplexity12.77—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity16.35—Unverified
2GAL 1.3BValidation perplexity12.53—Unverified
3GAL 6.7BValidation perplexity7.76—Unverified
4GAL 30BValidation perplexity4.28—Unverified
5GAL 120BValidation perplexity3.14—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity19.05—Unverified
2GAL 1.3BValidation perplexity15.82—Unverified
3GAL 6.7BValidation perplexity11.58—Unverified
4GAL 30BValidation perplexity8.23—Unverified
5GAL 120BValidation perplexity5.54—Unverified