SOTAVerified

Protein Structure Prediction

Image credit: FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours

Papers

Recently AddedMost HypedMost ActiveNeeds VerificationMost Verified

Showing 51–100 of 188 papers

TitleStatusHype
PSBench: a large-scale benchmark for estimating the accuracy of protein complex structural modelsCode0
LightNobel: Improving Sequence Length Limitation in Protein Structure Prediction Model via Adaptive Activation Quantization—0
Cognitio Emergens: Agency, Dimensions, and Dynamics in Human-AI Knowledge Co-Creation—0
AutoLoop: a novel autoregressive deep learning method for protein loop prediction with high accuracy—0
Exploring zero-shot structure-based protein fitness prediction—0
From sequence to protein structure and conformational dynamics with AI/ML—0
AI-guided Antibiotic Discovery Pipeline from Target Selection to Compound Identification—0
PETIMOT: A Novel Framework for Inferring Protein Motions from Sparse Data Using SE(3)-Equivariant Graph Neural Networks—0
Advanced Deep Learning Methods for Protein Structure Prediction and Design—0
Non-Canonical Crosslinks Confound Evolutionary Protein Structure Models—0
Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2—0
A Model-Centric Review of Deep Learning for Protein Design—0
CENTS: Generating synthetic electricity consumption time series for rare and unseen scenarios—0
Human Genome Book: Words, Sentences and ParagraphsCode0
Computational Protein Science in the Era of Large Language Models (LLMs)—0
A Survey of Deep Learning Methods in Protein Bioinformatics and its Impact on Protein Design—0
Protein Structure Prediction in the 3D HP Model Using Deep Reinforcement Learning—0
Applications of Knot Theory for the Improvement of the AlphaFold Protein Database—0
Ratio law: mathematical descriptions for a universal relationship between AI performance and input samples—0
Beyond Current Boundaries: Integrating Deep Learning and AlphaFold for Enhanced Protein Structure Prediction from Low-Resolution Cryo-EM Maps—0
CPE-Pro: A Structure-Sensitive Deep Learning Method for Protein Representation and Origin EvaluationCode0
Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction—0
pLDDT-Predictor: High-speed Protein Screening Using Transformer and ESM2Code0
Recent advances in interpretable machine learning using structure-based protein representations—0
CrysAtom: Distributed Representation of Atoms for Crystal Property Prediction—0
Leveraging Deep Generative Model For Computational Protein Design And Optimization—0
Technical Report of HelixFold3 for Biomolecular Structure Prediction—0
MultiMed: Massively Multimodal and Multitask Medical Understanding—0
AlphaFolding: 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance—0
Dihedral Angle Adherence: Evaluating Protein Structure Predictions in the Absence of Experimental Data—0
Benchmarking AlphaFold3's protein-protein complex accuracy and machine learning prediction reliability for binding free energy changes upon mutation—0
cryoSPHERE: Single-particle heterogeneous reconstruction from cryo EM—0
HelixFold-Multimer: Elevating Protein Complex Structure Prediction to New Heights—0
AlphaCrystal-II: Distance matrix based crystal structure prediction using deep learning—0
The curious case of A31P, a topology-switching mutant of the Repressor of Primer protein : A molecular dynamics study of its folding and misfolding—0
Convergence of Continuous Normalizing Flows for Learning Probability Distributions—0
AlphaFold2 for protein structure prediction: Best practices and critical analyses—0
Deep Reinforcement Learning for Modelling Protein Complexes—0
Advances of Deep Learning in Protein Science: A Comprehensive Survey—0
SGNet: Folding Symmetrical Protein Complex with Deep Learning—0
Understanding Biology in the Age of Artificial Intelligence—0
A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration—0
Linker-Tuning: Optimizing Continuous Prompts for Heterodimeric Protein Prediction—0
FoldExplorer: Fast and Accurate Protein Structure Search with Sequence-Enhanced Graph Embedding—0
PDB-Struct: A Comprehensive Benchmark for Structure-based Protein DesignCode0
AI in Pharma for Personalized Sequential Decision-Making: Methods, Applications and Opportunities—0
Direct Preference-Based Evolutionary Multi-Objective Optimization with Dueling Bandit—0
Exploring Post-Training Quantization of Protein Language ModelsCode0
CrysFormer: Protein Structure Prediction via 3d Patterson Maps and Partial Structure Attention—0
Deep Learning in Computational Biology: Advancements, Challenges, and Future Outlook—0
Show:102550
← PrevPage 2 of 4Next →
All datasetsCASPSeqCASPSimSeqPaenSeqUniProtSeq

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity20.62—Unverified
2GAL 1.3BValidation perplexity17.58—Unverified
3GAL 6.7BValidation perplexity17.29—Unverified
4GAL 30BValidation perplexity17.27—Unverified
5GAL 120BValidation perplexity17.26—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity19.18—Unverified
2GAL 1.3BValidation perplexity17.04—Unverified
3GAL 6.7BValidation perplexity16.35—Unverified
4GAL 30BValidation perplexity15.42—Unverified
5GAL 120BValidation perplexity12.77—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity16.35—Unverified
2GAL 1.3BValidation perplexity12.53—Unverified
3GAL 6.7BValidation perplexity7.76—Unverified
4GAL 30BValidation perplexity4.28—Unverified
5GAL 120BValidation perplexity3.14—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 125MValidation perplexity19.05—Unverified
2GAL 1.3BValidation perplexity15.82—Unverified
3GAL 6.7BValidation perplexity11.58—Unverified
4GAL 30BValidation perplexity8.23—Unverified
5GAL 120BValidation perplexity5.54—Unverified