| Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop | Jun 22, 2023 | Computational EfficiencyDrug Design | CodeCode Available | 1 |
| Generative diffusion model with inverse renormalization group flows | Jan 15, 2025 | Audio SynthesisDenoising | CodeCode Available | 1 |
| A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems | Dec 12, 2023 | Protein Structure PredictionSpecificity | CodeCode Available | 1 |
| RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design | Jan 25, 2023 | Contrastive LearningProtein Design | CodeCode Available | 1 |
| FoldMark: Protecting Protein Generative Models with Watermarking | Oct 27, 2024 | Drug DiscoveryProtein Structure Prediction | CodeCode Available | 1 |
| ExplainableFold: Understanding AlphaFold Prediction with Explainable AI | Jan 27, 2023 | counterfactualPrediction | CodeCode Available | 1 |
| Generating Novel, Designable, and Diverse Protein Structures by Equivariantly Diffusing Oriented Residue Clouds | Jan 29, 2023 | DenoisingProtein Design | CodeCode Available | 1 |
| DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing | Jun 1, 2023 | DenoisingProtein Structure Prediction | CodeCode Available | 1 |
| Deep Learning of Proteins with Local and Global Regions of Disorder | Feb 17, 2025 | Protein Structure Prediction | CodeCode Available | 1 |
| Energy-based models for atomic-resolution protein conformations | Apr 27, 2020 | Protein DesignProtein Structure Prediction | CodeCode Available | 1 |
| Enhancing the Protein Tertiary Structure Prediction by Multiple Sequence Alignment Generation | Jun 2, 2023 | Language ModelingLanguage Modelling | CodeCode Available | 1 |
| AtomSurf : Surface Representation for Learning on Protein Structures | Sep 28, 2023 | Atom3D benchmarkProtein Structure Prediction | CodeCode Available | 1 |
| DeepProtein: Deep Learning Library and Benchmark for Protein Sequence Learning | Oct 2, 2024 | Deep LearningDrug Discovery | CodeCode Available | 1 |
| EigenFold: Generative Protein Structure Prediction with Diffusion Models | Apr 5, 2023 | PredictionProtein Structure Prediction | CodeCode Available | 1 |
| Generative De Novo Protein Design with Global Context | Apr 21, 2022 | Protein DesignProtein Structure Prediction | CodeCode Available | 1 |
| Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins | Jul 11, 2025 | PredictionProtein Structure Prediction | CodeCode Available | 1 |
| Geometry-Complete Perceptron Networks for 3D Molecular Graphs | Nov 4, 2022 | Graph Neural NetworkGraph Representation Learning | CodeCode Available | 1 |
| Accurate and efficient protein embedding using multi-teacher distillation learning | May 20, 2024 | PredictionProtein Annotation | CodeCode Available | 1 |
| CREMP: Conformer-rotamer ensembles of macrocyclic peptides for machine learning | May 14, 2023 | Protein Structure Prediction | CodeCode Available | 1 |
| Pareto Dominance Archive and Coordinated Selection Strategy-Based Many-Objective Optimizer for Protein Structure Prediction | Feb 22, 2023 | Evolutionary AlgorithmsProtein Folding | CodeCode Available | 1 |
| A Survey of Deep Learning Methods in Protein Bioinformatics and its Impact on Protein Design | Jan 2, 2025 | Deep LearningPrediction | —Unverified | 0 |
| Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models | Jul 27, 2023 | Drug DiscoveryProtein Structure Prediction | —Unverified | 0 |
| AIS-INMACA: A Novel Integrated MACA Based Clonal Classifier for Protein Coding and Promoter Region Prediction | Mar 24, 2014 | Protein Structure Prediction | —Unverified | 0 |
| A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration | Feb 29, 2024 | Language ModelingLanguage Modelling | —Unverified | 0 |
| AI in Pharma for Personalized Sequential Decision-Making: Methods, Applications and Opportunities | Nov 30, 2023 | Decision MakingDrug Discovery | —Unverified | 0 |
