| FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours | Mar 2, 2022 | Protein Structure PredictionTranslation | CodeCode Available | 2 | 5 |
| MegaFold: System-Level Optimizations for Accelerating Protein Structure Prediction Models | Jun 24, 2025 | GPUProtein Folding | CodeCode Available | 2 | 5 |
| ProteinBERT: a universal deep-learning model of protein sequence and function | Feb 10, 2022 | Language ModelingLanguage Modelling | CodeCode Available | 2 | 5 |
| State-specific protein-ligand complex structure prediction with a multi-scale deep generative model | Sep 30, 2022 | BenchmarkingBlind Docking | CodeCode Available | 2 | 5 |
| SE(3) diffusion model with application to protein backbone generation | Feb 5, 2023 | Protein Structure Prediction | CodeCode Available | 2 | 5 |
| EigenFold: Generative Protein Structure Prediction with Diffusion Models | Apr 5, 2023 | PredictionProtein Structure Prediction | CodeCode Available | 1 | 5 |
| DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing | Jun 1, 2023 | DenoisingProtein Structure Prediction | CodeCode Available | 1 | 5 |
| Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations | Nov 9, 2019 | Deep LearningDrug Design | CodeCode Available | 1 | 5 |
| Energy-based models for atomic-resolution protein conformations | Apr 27, 2020 | Protein DesignProtein Structure Prediction | CodeCode Available | 1 | 5 |
| Generating Novel, Designable, and Diverse Protein Structures by Equivariantly Diffusing Oriented Residue Clouds | Jan 29, 2023 | DenoisingProtein Design | CodeCode Available | 1 | 5 |
