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Protein Language Model

Use of protein language models in protein property prediction

Papers

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Showing 51–73 of 73 papers

TitleStatusHype
ProtFlow: Fast Protein Sequence Design via Flow Matching on Compressed Protein Language Model Embeddings—0
ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation—0
xTrimoABFold: De novo Antibody Structure Prediction without MSA—0
xTrimoPGLM: Unified 100B-Scale Pre-trained Transformer for Deciphering the Language of Protein—0
Ankh: Optimized Protein Language Model Unlocks General-Purpose ModellingCode0
DrugTar Improves Druggability Prediction by Integrating Large Language Models and Gene OntologiesCode0
Decoupled Sequence and Structure Generation for Realistic Antibody DesignCode0
AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptidesCode0
Protein language model rescue mutations highlight variant effects and structure in clinically relevant genesCode0
Detection of circular permutations by Protein Language ModelsCode0
tcrLM: a lightweight protein language model for predicting T cell receptor and epitope binding specificityCode0
ProtiGeno: a prokaryotic short gene finder using protein language modelsCode0
Vaxformer: Antigenicity-controlled Transformer for Vaccine Design Against SARS-CoV-2Code0
MSA TransformerCode0
On Recovering Higher-order Interactions from Protein Language ModelsCode0
Leveraging Protein Language Model Embeddings for Catalytic Turnover Prediction of Adenylate Kinase Orthologs in a Low-Data RegimeCode0
LEP-AD: Language Embedding of Proteins and Attention to Drugs predicts drug target interactionsCode0
HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an AlternativeCode0
Fine-tuning the ESM2 protein language model to understand the functional impact of missense variantsCode0
CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding ResiduesCode0
ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learningCode0
Comprehensive Assessment of BERT-Based Methods for Predicting Antimicrobial PeptidesCode0
Cognate Transformer for Automated Phonological Reconstruction and Cognate Reflex PredictionCode0
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