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Protein Language Model

Use of protein language models in protein property prediction

Papers

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Showing 51–73 of 73 papers

TitleStatusHype
pLMFPPred: a novel approach for accurate prediction of functional peptides integrating embedding from pre-trained protein language model and imbalanced learning—0
PeptideBERT: A Language Model based on Transformers for Peptide Property PredictionCode1
Improving antibody language models with native pairingCode1
Pairing interacting protein sequences using masked language modelingCode1
ProtiGeno: a prokaryotic short gene finder using protein language modelsCode0
Protein-DNA binding sites prediction based on pre-trained protein language model and contrastive learningCode1
Vaxformer: Antigenicity-controlled Transformer for Vaccine Design Against SARS-CoV-2Code0
CCPL: Cross-modal Contrastive Protein Learning—0
LEP-AD: Language Embedding of Proteins and Attention to Drugs predicts drug target interactionsCode0
Ankh: Optimized Protein Language Model Unlocks General-Purpose ModellingCode0
Plug & Play Directed Evolution of Proteins with Gradient-based Discrete MCMCCode1
Protein Language Models and Structure Prediction: Connection and ProgressionCode1
xTrimoABFold: De novo Antibody Structure Prediction without MSA—0
Protein language model rescue mutations highlight variant effects and structure in clinically relevant genesCode0
Machine learning can guide experimental approaches for protein digestibility estimations—0
HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an AlternativeCode0
DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsCode1
Generative power of a protein language model trained on multiple sequence alignmentsCode1
Structure-aware Protein Self-supervised LearningCode1
ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core LearningCode1
HMD-AMP: Protein Language-Powered Hierarchical Multi-label Deep Forest for Annotating Antimicrobial Peptides—0
MSA TransformerCode0
Algorithm for Optimized mRNA Design Improves Stability and ImmunogenicityCode1
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