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Protein Language Model

Use of protein language models in protein property prediction

Papers

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Showing 26–50 of 73 papers

TitleStatusHype
Long-context Protein Language Modeling Using Bidirectional Mamba with Shared Projection LayersCode1
AbRank: A Benchmark Dataset and Metric-Learning Framework for Antibody-Antigen Affinity RankingCode1
Multi-Scale Representation Learning for Protein Fitness PredictionCode1
Decoupled Sequence and Structure Generation for Realistic Antibody DesignCode0
On Recovering Higher-order Interactions from Protein Language ModelsCode0
Ankh: Optimized Protein Language Model Unlocks General-Purpose ModellingCode0
Cognate Transformer for Automated Phonological Reconstruction and Cognate Reflex PredictionCode0
Comprehensive Assessment of BERT-Based Methods for Predicting Antimicrobial PeptidesCode0
ProtiGeno: a prokaryotic short gene finder using protein language modelsCode0
AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptidesCode0
ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learningCode0
tcrLM: a lightweight protein language model for predicting T cell receptor and epitope binding specificityCode0
Protein language model rescue mutations highlight variant effects and structure in clinically relevant genesCode0
DrugTar Improves Druggability Prediction by Integrating Large Language Models and Gene OntologiesCode0
CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding ResiduesCode0
Detection of circular permutations by Protein Language ModelsCode0
LEP-AD: Language Embedding of Proteins and Attention to Drugs predicts drug target interactionsCode0
Vaxformer: Antigenicity-controlled Transformer for Vaccine Design Against SARS-CoV-2Code0
Leveraging Protein Language Model Embeddings for Catalytic Turnover Prediction of Adenylate Kinase Orthologs in a Low-Data RegimeCode0
Fine-tuning the ESM2 protein language model to understand the functional impact of missense variantsCode0
xTrimoPGLM: Unified 100B-Scale Pre-trained Transformer for Deciphering the Language of Protein—0
Application of Quantum Tensor Networks for Protein Classification—0
Approximating mutual information of high-dimensional variables using learned representations—0
A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration—0
Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering—0
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