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Protein Language Model

Use of protein language models in protein property prediction

Papers

Showing 2650 of 73 papers

TitleStatusHype
Structure-aware Protein Self-supervised LearningCode1
ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core LearningCode1
Algorithm for Optimized mRNA Design Improves Stability and ImmunogenicityCode1
Protein Design with Dynamic Protein Vocabulary0
Leveraging Protein Language Model Embeddings for Catalytic Turnover Prediction of Adenylate Kinase Orthologs in a Low-Data RegimeCode0
ProtFlow: Fast Protein Sequence Design via Flow Matching on Compressed Protein Language Model Embeddings0
Customizing Spider Silk: Generative Models with Mechanical Property Conditioning for Protein Engineering0
Chem42: a Family of chemical Language Models for Target-aware Ligand Generation0
ExPath: Towards Explaining Targeted Pathways for Biological Knowledge Bases0
InfoBridge: Mutual Information estimation via Bridge Matching0
Comprehensive Assessment of BERT-Based Methods for Predicting Antimicrobial PeptidesCode0
Pre-trained protein language model for codon optimization0
DapPep: Domain Adaptive Peptide-agnostic Learning for Universal T-cell Receptor-antigen Binding Affinity Prediction0
High fitness paths can connect proteins with low sequence overlap0
Fine-tuning the ESM2 protein language model to understand the functional impact of missense variantsCode0
DrugTar Improves Druggability Prediction by Integrating Large Language Models and Gene OntologiesCode0
Approximating mutual information of high-dimensional variables using learned representations0
Peptide Sequencing Via Protein Language Models0
tcrLM: a lightweight protein language model for predicting T cell receptor and epitope binding specificityCode0
Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering0
Detection of circular permutations by Protein Language ModelsCode0
AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptidesCode0
DisorderUnetLM: Validating ProteinUnet for efficient protein intrinsic disorder prediction0
On Recovering Higher-order Interactions from Protein Language ModelsCode0
Application of Quantum Tensor Networks for Protein Classification0
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