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Protein Language Model

Use of protein language models in protein property prediction

Papers

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Showing 1–50 of 73 papers

TitleStatusHype
Simulating 500 million years of evolution with a language modelCode7
DPLM-2: A Multimodal Diffusion Protein Language ModelCode3
Diffusion Language Models Are Versatile Protein LearnersCode3
ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular ModelingCode2
AntiFold: Improved antibody structure-based design using inverse foldingCode2
Structure-Aligned Protein Language ModelCode2
Retrieval-Enhanced Mutation Mastery: Augmenting Zero-Shot Prediction of Protein Language ModelCode2
Protein Language Models and Structure Prediction: Connection and ProgressionCode1
ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core LearningCode1
PeptideBERT: A Language Model based on Transformers for Peptide Property PredictionCode1
Peptide-GPT: Generative Design of Peptides using Generative Pre-trained Transformers and Bio-informatic SupervisionCode1
PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream ApplicationsCode1
AbRank: A Benchmark Dataset and Metric-Learning Framework for Antibody-Antigen Affinity RankingCode1
Plug & Play Directed Evolution of Proteins with Gradient-based Discrete MCMCCode1
Protein-DNA binding sites prediction based on pre-trained protein language model and contrastive learningCode1
DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsCode1
Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent SpaceCode1
Structure-aware Protein Self-supervised LearningCode1
Structure-Informed Protein Language ModelCode1
Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language modelCode1
Expert-guided protein language models enable accurate and blazingly fast fitness predictionCode1
Generative power of a protein language model trained on multiple sequence alignmentsCode1
Improving antibody language models with native pairingCode1
Learning to engineer protein flexibilityCode1
Algorithm for Optimized mRNA Design Improves Stability and ImmunogenicityCode1
Long-context Protein Language Modeling Using Bidirectional Mamba with Shared Projection LayersCode1
Multi-Scale Representation Learning for Protein Fitness PredictionCode1
Pairing interacting protein sequences using masked language modelingCode1
Decoupled Sequence and Structure Generation for Realistic Antibody DesignCode0
On Recovering Higher-order Interactions from Protein Language ModelsCode0
HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an AlternativeCode0
Ankh: Optimized Protein Language Model Unlocks General-Purpose ModellingCode0
Cognate Transformer for Automated Phonological Reconstruction and Cognate Reflex PredictionCode0
tcrLM: a lightweight protein language model for predicting T cell receptor and epitope binding specificityCode0
Comprehensive Assessment of BERT-Based Methods for Predicting Antimicrobial PeptidesCode0
ProtiGeno: a prokaryotic short gene finder using protein language modelsCode0
MSA TransformerCode0
DrugTar Improves Druggability Prediction by Integrating Large Language Models and Gene OntologiesCode0
Protein language model rescue mutations highlight variant effects and structure in clinically relevant genesCode0
LEP-AD: Language Embedding of Proteins and Attention to Drugs predicts drug target interactionsCode0
Leveraging Protein Language Model Embeddings for Catalytic Turnover Prediction of Adenylate Kinase Orthologs in a Low-Data RegimeCode0
CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding ResiduesCode0
Vaxformer: Antigenicity-controlled Transformer for Vaccine Design Against SARS-CoV-2Code0
ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learningCode0
AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptidesCode0
Detection of circular permutations by Protein Language ModelsCode0
Fine-tuning the ESM2 protein language model to understand the functional impact of missense variantsCode0
xTrimoPGLM: Unified 100B-Scale Pre-trained Transformer for Deciphering the Language of Protein—0
Application of Quantum Tensor Networks for Protein Classification—0
Approximating mutual information of high-dimensional variables using learned representations—0
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