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Protein Language Model

Use of protein language models in protein property prediction

Papers

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Showing 1–50 of 73 papers

TitleStatusHype
Simulating 500 million years of evolution with a language modelCode7
DPLM-2: A Multimodal Diffusion Protein Language ModelCode3
Diffusion Language Models Are Versatile Protein LearnersCode3
ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular ModelingCode2
Structure-Aligned Protein Language ModelCode2
Retrieval-Enhanced Mutation Mastery: Augmenting Zero-Shot Prediction of Protein Language ModelCode2
AntiFold: Improved antibody structure-based design using inverse foldingCode2
Algorithm for Optimized mRNA Design Improves Stability and ImmunogenicityCode1
Long-context Protein Language Modeling Using Bidirectional Mamba with Shared Projection LayersCode1
AbRank: A Benchmark Dataset and Metric-Learning Framework for Antibody-Antigen Affinity RankingCode1
Protein Language Models and Structure Prediction: Connection and ProgressionCode1
Multi-Scale Representation Learning for Protein Fitness PredictionCode1
Pairing interacting protein sequences using masked language modelingCode1
Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language modelCode1
DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsCode1
Protein-DNA binding sites prediction based on pre-trained protein language model and contrastive learningCode1
ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core LearningCode1
Plug & Play Directed Evolution of Proteins with Gradient-based Discrete MCMCCode1
Structure-Informed Protein Language ModelCode1
Expert-guided protein language models enable accurate and blazingly fast fitness predictionCode1
Structure-aware Protein Self-supervised LearningCode1
PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream ApplicationsCode1
Generative power of a protein language model trained on multiple sequence alignmentsCode1
Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent SpaceCode1
Improving antibody language models with native pairingCode1
Learning to engineer protein flexibilityCode1
Peptide-GPT: Generative Design of Peptides using Generative Pre-trained Transformers and Bio-informatic SupervisionCode1
PeptideBERT: A Language Model based on Transformers for Peptide Property PredictionCode1
A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration—0
Application of Quantum Tensor Networks for Protein Classification—0
Approximating mutual information of high-dimensional variables using learned representations—0
Peptide Sequencing Via Protein Language Models—0
Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering—0
Chem42: a Family of chemical Language Models for Target-aware Ligand Generation—0
Customizing Spider Silk: Generative Models with Mechanical Property Conditioning for Protein Engineering—0
DapPep: Domain Adaptive Peptide-agnostic Learning for Universal T-cell Receptor-antigen Binding Affinity Prediction—0
Diffusion on language model encodings for protein sequence generation—0
ExPath: Towards Explaining Targeted Pathways for Biological Knowledge Bases—0
ForceGen: End-to-end de novo protein generation based on nonlinear mechanical unfolding responses using a protein language diffusion model—0
HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an Alternative—0
High fitness paths can connect proteins with low sequence overlap—0
HMD-AMP: Protein Language-Powered Hierarchical Multi-label Deep Forest for Annotating Antimicrobial Peptides—0
InfoBridge: Mutual Information estimation via Bridge Matching—0
CCPL: Cross-modal Contrastive Protein Learning—0
Machine learning can guide experimental approaches for protein digestibility estimations—0
MSA Transformer—0
pLMFPPred: a novel approach for accurate prediction of functional peptides integrating embedding from pre-trained protein language model and imbalanced learning—0
Pre-trained protein language model for codon optimization—0
ProPath: Disease-Specific Protein Language Model for Variant Pathogenicity—0
Protein Design with Dynamic Protein Vocabulary—0
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