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Protein Language Model

Use of protein language models in protein property prediction

Papers

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Showing 1–50 of 73 papers

TitleStatusHype
Simulating 500 million years of evolution with a language modelCode7
Diffusion Language Models Are Versatile Protein LearnersCode3
DPLM-2: A Multimodal Diffusion Protein Language ModelCode3
Retrieval-Enhanced Mutation Mastery: Augmenting Zero-Shot Prediction of Protein Language ModelCode2
Structure-Aligned Protein Language ModelCode2
ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular ModelingCode2
AntiFold: Improved antibody structure-based design using inverse foldingCode2
Pairing interacting protein sequences using masked language modelingCode1
Algorithm for Optimized mRNA Design Improves Stability and ImmunogenicityCode1
Long-context Protein Language Modeling Using Bidirectional Mamba with Shared Projection LayersCode1
Multi-Scale Representation Learning for Protein Fitness PredictionCode1
AbRank: A Benchmark Dataset and Metric-Learning Framework for Antibody-Antigen Affinity RankingCode1
Protein Language Models and Structure Prediction: Connection and ProgressionCode1
Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language modelCode1
DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsCode1
Protein-DNA binding sites prediction based on pre-trained protein language model and contrastive learningCode1
ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core LearningCode1
Plug & Play Directed Evolution of Proteins with Gradient-based Discrete MCMCCode1
Structure-Informed Protein Language ModelCode1
Expert-guided protein language models enable accurate and blazingly fast fitness predictionCode1
Structure-aware Protein Self-supervised LearningCode1
PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream ApplicationsCode1
Generative power of a protein language model trained on multiple sequence alignmentsCode1
Peptide-GPT: Generative Design of Peptides using Generative Pre-trained Transformers and Bio-informatic SupervisionCode1
Improving antibody language models with native pairingCode1
Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent SpaceCode1
Learning to engineer protein flexibilityCode1
PeptideBERT: A Language Model based on Transformers for Peptide Property PredictionCode1
A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration—0
Application of Quantum Tensor Networks for Protein Classification—0
Approximating mutual information of high-dimensional variables using learned representations—0
Peptide Sequencing Via Protein Language Models—0
Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering—0
Chem42: a Family of chemical Language Models for Target-aware Ligand Generation—0
Customizing Spider Silk: Generative Models with Mechanical Property Conditioning for Protein Engineering—0
DapPep: Domain Adaptive Peptide-agnostic Learning for Universal T-cell Receptor-antigen Binding Affinity Prediction—0
Diffusion on language model encodings for protein sequence generation—0
ExPath: Towards Explaining Targeted Pathways for Biological Knowledge Bases—0
ForceGen: End-to-end de novo protein generation based on nonlinear mechanical unfolding responses using a protein language diffusion model—0
High fitness paths can connect proteins with low sequence overlap—0
HMD-AMP: Protein Language-Powered Hierarchical Multi-label Deep Forest for Annotating Antimicrobial Peptides—0
InfoBridge: Mutual Information estimation via Bridge Matching—0
CCPL: Cross-modal Contrastive Protein Learning—0
Machine learning can guide experimental approaches for protein digestibility estimations—0
pLMFPPred: a novel approach for accurate prediction of functional peptides integrating embedding from pre-trained protein language model and imbalanced learning—0
Pre-trained protein language model for codon optimization—0
ProPath: Disease-Specific Protein Language Model for Variant Pathogenicity—0
Protein Design with Dynamic Protein Vocabulary—0
DisorderUnetLM: Validating ProteinUnet for efficient protein intrinsic disorder prediction—0
Protein Language Model-Powered 3D Ligand Binding Site Prediction from Protein Sequence—0
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