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Protein Language Model

Use of protein language models in protein property prediction

Papers

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Showing 1–25 of 73 papers

TitleStatusHype
Simulating 500 million years of evolution with a language modelCode7
Diffusion Language Models Are Versatile Protein LearnersCode3
DPLM-2: A Multimodal Diffusion Protein Language ModelCode3
ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular ModelingCode2
Retrieval-Enhanced Mutation Mastery: Augmenting Zero-Shot Prediction of Protein Language ModelCode2
AntiFold: Improved antibody structure-based design using inverse foldingCode2
Structure-Aligned Protein Language ModelCode2
Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent SpaceCode1
ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core LearningCode1
Protein-DNA binding sites prediction based on pre-trained protein language model and contrastive learningCode1
Learning to engineer protein flexibilityCode1
Protein Language Models and Structure Prediction: Connection and ProgressionCode1
Peptide-GPT: Generative Design of Peptides using Generative Pre-trained Transformers and Bio-informatic SupervisionCode1
Improving antibody language models with native pairingCode1
PeptideBERT: A Language Model based on Transformers for Peptide Property PredictionCode1
PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream ApplicationsCode1
Long-context Protein Language Modeling Using Bidirectional Mamba with Shared Projection LayersCode1
Generative power of a protein language model trained on multiple sequence alignmentsCode1
Pairing interacting protein sequences using masked language modelingCode1
DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsCode1
AbRank: A Benchmark Dataset and Metric-Learning Framework for Antibody-Antigen Affinity RankingCode1
Expert-guided protein language models enable accurate and blazingly fast fitness predictionCode1
Algorithm for Optimized mRNA Design Improves Stability and ImmunogenicityCode1
Multi-Scale Representation Learning for Protein Fitness PredictionCode1
Plug & Play Directed Evolution of Proteins with Gradient-based Discrete MCMCCode1
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